Genomic Location: chr7:29618514...29623490
NR annotation: XP_020611547.1, speckle targeted PIP5K1A-regulated poly(A) polymerase-like [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families
| CDS |
| ENSAVKT00000041653 |
| Transcript |
| ENSAVKT00000041653 |
| Protein |
| ENSAVKP00000038545.1 |
| UniProt accession | Description |
|---|---|
| Q4KMD7 | Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio rerio OX=7955 GN=tut1 PE=2 SV=1 |
| A9JTS5 | Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus tropicalis OX=8364 GN=tut1 PE=2 SV=1 |
| Q1JPD6 | Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus OX=9913 GN=TUT1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004655 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01909 all species → | NTP_transf_2 | Nucleotidyltransferase domain | Domain | Interproscan |
| PF17797 all species → | RL | RL domain | Domain | Interproscan |
| PF12874 all species → | zf-met | Zinc-finger of C2H2 type | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR002934 all species → | Domain | Polymerase, nucleotidyl transferase domain | Interproscan |
| IPR043519 all species → | Homologous_superfamily | Nucleotidyltransferase superfamily | Interproscan |
| IPR041252 all species → | Domain | RL domain | Interproscan |
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12271 all species → | POLY A POLYMERASE CID PAP -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0016779 all species → | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0006378 all species → | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0031123 all species → | Biological Process | RNA 3'-end processing | Interproscan |
| GO:1990817 all species → | Molecular Function | poly(A) RNA polymerase activity | Interproscan |
ENSAVKP00000038545.1.Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
