Gene detail

Detailed information of ENSAVKP00000041336.1 in Catalaphyllia jardinei

Genomic Location: chr9:24832261...24856228
NR annotation: KAJ7383784.1, Bifunctional epoxide hydrolase 2 [Desmophyllum pertusum]
Species Catalaphyllia jardinei · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSAVKT00000044752

AAGGTTGTACCACAGAAATCCCATGCTTTCCCTTGCAAGAAAAACAGGAATTCATCGAGAAATGATAAAGCTCGTTATATTTGACCTTGGGGGTGTCATAATCACAAGCCCTATCTTTGCGTTTCAGAAGTATTCATGGGAAAAAGGAATTCCAAGTGACTTTGTTGTTAAAAGCTTTATAAGCAATGAAAAGAAACTCGACACTGGACAAGTATCTCTTTCTCAGTTCTGCTCTGAAATGGATGCTATTTACAGAGAACATGCTTCCCAACAAGGATATGATCTCTGTAAAGAGATAAGATTCCAAGAAATCATGGATGAATACCTCTCAACGGCAAAAGTGATCCCAGAAATGCTGTATGCAGCAACTGCTCTAAGGAAGCAAGGTATCAAAACCTGTGTTCTGACAAATAACTGGACCAATGACacaggaaagaacttcaagttATTTCATTCCTTATTCCATTATTTTGATGAGGTGTTTGAATCATGCAAACTTGGACTTAgtaaacctgatcctgatatttaTACCCATGTCTGCTCAAAGATGAGTGTCAAGCCTTCAGAGGTTATATTTTTAGACGATTCATCTCAAAATCTGAAACCAGCCAGAGAGATGGGAATGAGAACAATTTTGGTGAAGAATCCAATCACAGCTTTGAAGGACCTGCAGAAAGTAACAGGAATTGATatCTTCCAACAGTATGTTGTTGAACCATGTTCAGTCCATGATGCAGTTCACTGCTACGCCAATCTTAAGACAGGCATCAGGATGCATTATGTGGAGATGGGACATGGACCTGTGGTCATTCTGCTTCATGGCTTTCCTGAATTATGGTATATTTGGAAATACCAGATCAAAGCTCTTGCAATTGCTGGCTACAGAGTAATAGCGCCAGATCTGCGAGGAATGGGACAGACCTCCAGTCCATATGAAATTGATGCGTATGGCCATGAAAACGTGTGTGCTGATATAATCGCCCTTATGAATTCACTGTATATAGAGCAAGCCACAGTAGTGGGACGTGATCTTGGTGGATTTATTGCATGGGACCTAAGTCTTCATTATCCTGACCGGATTCTAGCAGTTATAAATATGACTCCATTTATACCTACTTTTCCTAACATTAACCCACTGGAGAGATTGCAGGCAAACCCCGGGATATTTCAATATCAGCTTTATTTTCACAAGGAGGGTGTTGCAGAGCAAGAACTTGAGAGGGACATAGAAAGATCATTCATCCTGTTAATGAGAGGTGCTAAAGATATGCTTCGTTTAAGTACTTCTGATGTACTAGAGAGAGGTGGAATGTTTACAGGGCTGCCAGATAAAGTCAACAGAAGCTGGATACTGACTGATGACAGCTTGAAGTACTTTGTTGAGATGTACAGCAAGACAGGATTTAGAGGACCTCTAAATTGGTACAGGACAATGGAAAAAGATTGGCAATGGAACTGCAAGATGGCTGGACGCAAGGTACAGCAACCAAGCTTGATGATTACTACAGGAAAAGATGGTCTTATCAGACCGCAATTCTGTGCAAAAATGGACCAGTGGGTTTGCAAGTTAGACAGAGCACACATAGAAGATGCATCACACTGGGTAACCCTAGAATGTCCTTTAGAACTGAACAGAATCATGGTGGAGTGGCTGAACAAAGTTCACTTGACACACTCTGATCATTCCAAGTTGTGACAGCCTCAAGAATTGCTGATTTTAAGGGAAATAAACAAGagtttttgtttcacaaaattgtcTTAAAATTTCTTAAATTACATTCTAACAGAACACCCTGTTGTTCCATTGCAGTTTTAAGGTTAATTTATTTAAgctaaatatattttatatgagAAGCATTTTAATGAAGGGATAGAGAATCAATCTAAATGATTATTATTTTGTGATTTTGTAGATTTTCCAATTATGCATGTATCTGTATTTAGCTTAGCCTGATTCTCAGGTTGCTTGCAACCACACCGTGCTGTCGCTGAGAGCAACAGTCTGAGAATCAGGCTAAATTTAGTTTAGAAATCTTATTAATGATGTAAAAGAAAATGAGggccattttatttctcatGATCATATCAAAAATATACTTTGTTGCATAATGTTGTTTCATTGCGAAGTGTCCAGGCTTGAGAACAGTGACACTTGATGGCCAGAATGAAAATGAATAATCATTTTGCCAAATTTATTGAGGCCATTGTTTTGTACTTGGCTTGGCCCTTCTTATGACACCACTGTTGTTAAGTTCATTATAAAATTTGTAAACAGTAAAACAGAAATTCTGgtctttttagttgttttaattcatttcttACATTTAGAATCACAGATTTTGTTGTTCAACAAGGGTTTAAACTGAGCATTTTGCCACTTGGCCTCAAATACATCTTATATATTCAAGataaatttgcaataataaatGATTTTTACATTTACCTTAAGCATGTGCATGTGTTTCTATAGAACACAGCATTTTAATAGCATTTGGTCGTTAAACCGTAGTTTATAGAGGGGAATTGTTAAATGAAACTGGACAAAGttctttgtatgtttttgttcttccttGGCCTTGACAGTGCACAAAACACGATAATTGTGTACTCCATGCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6Q2C2	Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=2 SV=1
P80299	Bifunctional epoxide hydrolase 2 OS=Rattus norvegicus OX=10116 GN=Ephx2 PE=1 SV=1
P34914	Bifunctional epoxide hydrolase 2 OS=Mus musculus OX=10090 GN=Ephx2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009834 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF00561 all species →	Abhydrolase_1	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011945 all species →	Domain	Predicted HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023198 all species →	Homologous_superfamily	Phosphoglycolate phosphatase-like, domain 2	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR006439 all species →	Family	HAD hydrolase, subfamily IA	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR000639 all species →	Family	Epoxide hydrolase-like	Interproscan
IPR000073 all species →	Domain	Alpha/beta hydrolase fold-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43329 all species →	EPOXIDE HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0042577 all species →	Molecular Function	lipid phosphatase activity	Interproscan
GO:0042632 all species →	Biological Process	cholesterol homeostasis	Interproscan
GO:0046839 all species →	Biological Process	phospholipid dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000041336.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →