Gene detail

Detailed information of ENSAVKP00000044944.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_022794024.1, serine--tRNA ligase, cytoplasmic-like [Stylophora pistillata]
Species abbreviation CJARD · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000048657

ccaatgagcgcgcgtgctaGATAGGCACTATTATGGGATAGTCGGTTACTACTCGACCCATGTATCACTCGGCCAGTTATTTCCGAGGCATGCGATTGCATCAGCTGAAGTTCTTTTCGCTTACTTTGAGTTGTCCAAGGCATTTTTCTCTCTCGTTCTTCAAAATGGTTCTAGATCTCGACCTATACAGGGCTGATAAAGGTGGTGACCCCGAAAAAATCCGCGAAAATCAGAGCAAGCGATACAAAGACACCACTCTCGTGGACCAAGTCGTCGAAGCTGATACAAAGTGGAGGAAATTACGATTTTCGGCCGACAACTGGAACAAACTCAAGAACGTATGCAGCAAACAGATCGGCGAAAAGATGACGCGTAAAGAACCGGTGGGTGAGAGTGAAGAAGTACCTAAAAAAATAGTCGATGGCTTAGAGGACATTACTCCAGAAATGTTAGAGGGTCTTACTGTTTCCCAAATCAAGAATGTTCGAACGCTAATTGATAGAAATATAGCCGAATGTAATGAGGAGGTGGTTAATATAGAACAGCTGAGGAATGAGAAACTATTTGAAGTTGGAAATCTTCTGCATGAATCAGTTCCTGTTAGTAATGATGAGGATGATAACAGAGTGGAGAGAACTTGGGGTGACAGTACAGTAAGAAAGAAGTACTCTCATGTGGATCTGGCATACATGGTGGATGGAGTTGATACAGAGAGAGGTGCTTCAGTAGCTGGCAGCAGAGGTTATTTTCTCAAGGGGCCACTTGTTTTCCTAGAGCAGGCCCTCATTCAGCTGGCCACACGTATGTTATTCAACAAAGGGTTTGTGCCACTGTATACACCATTCTTCATGAGGAAGGAAGCTATGCAAGAAGTGGCTCAACTAAGTCAATTTGATGAAGAGCTGTACAAGGTTATTGGAAAAGGGTCTGACGAGGCAGGATATGAAGAAAGATACCTGATTGCAACTAGTGAACAACCGATTGCAGCATTTCATCGTGGAGAATGGATGGCTGCTAATGAACTTCCCAAGAAATATTCTGGCTTCTCATCATGTTTCAGGCAGGAAGCAGGAGCTCATGGAAGGGACACACGTGGTATCTTCAGGGTACATCAGTTTGAAAAGGTTGAACAGTTTGTTATCTGTTCCCCTCATGATGGCATTTCCTGGCAGATTTTCCATGAGATGATTGGCAATGCTGAGGAATTTAACCAGGCTTTGGGAATTCCATACAGAATAGTTAATATAGTTTCTGGTGAGCTGAACAATGCAGCAGCCATGAAGTATGATTTGGAGGCTTGGTTTCCAGGAAGTGGAGCTTTCCGTGAACTGGTATCCTGTTCAAACTGCACAGATTACCAAGCAAGAAGATTGCAAGTTCGTTTTGGACAGACTAAGAAAATGGGGGCACAGACCGAATATGTTCACATGTTGAATGCCACAATGTGTGCTGTATCGAGAACCATTTGTGCGCTGTTGGAGAATTACCAAACAGAAGAAGGTATTGCTCTTCCTCCTGTCTTAAAGCCTCTGCTTCCGGAGGGTTTGGATTTCATAAAATTCGTTAAACCTGCTCCAATTGACGAGAAACCAGAGGCGAAAAAACAGAAGAAGAAGTCGAAGAACAAAGCTGGCGCCCAGAGTGAAGGTTGTTTGGAAGCCAAAATGGAAAATATGGACGTTACCAAAGAATGAACGCTAAATAGTTAGTTAATTGAATTGGATTGATGCAATGTCACCCAACTGACATGTCGCTGGTGGGTTTATTGGATGATAGCAAAGAACGAGAGGTGTTGAGGTACGTAGACAAAAAAGCTTCCCCTCACCCCACCCTTCTCCTCATTCTAGCGCCTTCACCTCAATAATTGCTCAACTGCCTTCATCGGTATTGCAACATGCATGCTATAAGTTGCATCCTGCAACATAGTCGGCTCTGCCATCACGCGGTGTGTTTCTCGTGTGTCCATGAAGGTAAAGAAGGAAagttattgaattttttttttcagttagtcCGGGGAAATTGAAGTAAAAGTGTATGTATTATAATCTGTAACTTTCTTTTGCAGTTTCTGGTTCGTCGCGCAATAACTCACTGGTGTTAGTAATTAACGTTGTATAATCTTCTAAATGAAGTTTACGAAGTGGAGAAATAAAATGTAGAAGTTTTAATGTGTTTTGATTTCATCTGTGTTAGACTAGTGATTTAACAACAACACATACTGTATTACGAAGAAGACTTTAGGTCGTGGAGTTGTGCCGCCCCCAGACTTTAGGATAAGGCTATTTCTAGTTTTTTGGAAATGGAACAAAAAAGATGATGTACCCAGTTTCTAATTTATTGGTTGGTTGCACGATCTACAACTCTCACACTCTCGGGGGTAAAATATGTTCTCGAAGGATATATAATGCCACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13642	Serine--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=SARS1 PE=1 SV=2
Q6P799	Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Sars1 PE=1 SV=3
P26636	Serine--tRNA ligase, cytoplasmic OS=Cricetulus griseus OX=10029 GN=SARS1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan
PF02403 all species →	Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR002317 all species →	Family	Serine-tRNA ligase, type1	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR015866 all species →	Domain	Serine-tRNA synthetase, type1, N-terminal	Interproscan
IPR042103 all species →	Homologous_superfamily	Serine-tRNA synthetase, type1, N-terminal domain superfamily	Interproscan
IPR033729 all species →	Domain	Serine-tRNA ligase catalytic core domain	Interproscan
IPR010978 all species →	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11778 all species →	SERYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004828 all species →	Molecular Function	serine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006434 all species →	Biological Process	seryl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01875	SARS, serS; seryl-tRNA synthetase	EC:6.1.1.11	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.