Gene detail

Detailed information of ENSAVKP00000045066.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020618662.1, PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000048792

CACGTTTGTGAGAGTAACGCAAGgtgaagtaaagaaaaaaatggcggcagTAATTTGAAGGTCGTTTATTTACGATGTTTTAGCAACGAGTTATTTCTTGAAAACGCGCCGATCGCTTAGTAATGAATCATTCTAACTCGGCGACAGGTCACAGACATTCAAGGCCCATGCTATGTCGGTATTACAATACGAATGGATACTGTTTTTATGGCGATCAATGCCAGTTTGTTCATGCGAAGCCTTCTTCCAACGACGGTCGAACGGtTGGAGAAAAGAGCTTTAATCTTGGGGCTCCAAACAGTGTGAACTCATTTCATAGGAGCACATCCACACCAGTGTTTCCCTCACCTGCCAATGGCCCACCTATCAATAACGGTCCTCCTATCAATAATGGTCCACCCATTAATAATGGCCCTATTGGGTCGAAAGGGCTCAGAGGTGGAGGCTTCAAGAATAATGCCACCGTTTCTGATAACTATGTCAGTAACATGGCACAGATATCAATATCTACAAATAAGATGCCTCCAGGATCTCTTGGTGGACATCCGTCTCCTCTCTCACCTTCAAAGAAGGCATTTGCATCGTCCTTAGCTCCGGGTGGACCTGTGTCTCCTCTGCATTCTCCTAACAAGCCATCTCTTGGATCTCCAAAACCACAACACAACCCAGTCACATCACAAGCTTTTGAATTTCTTCCATCGACTGCAAATCAGAGTCTGCCCCAGGCCCCTATGCATAGTCAAGCCCAGGTCCCTGCTCCTCAACAGATGGAATCTATTGGTGGAACAACATACTTTTACACTCAACAAGCGCAGCAACAGCCTGCTGTGCTGTTTCCTTCTTACCAGGCGTACATTTCAGAACCCTCTCACCTTGCTCATCTCCACAGCAGTCAAACACGTAACAATGCATTCTCAATGTCAGCTCAGATTAGACAGgaGCTTATCAACCAACATACACTGAGTATGGCGCAGCTGGACCCAGAAAATCAAACTGTACCACAAGAAGTGGATAGCTATCACAGCTTATGCCCCATAGAACCACTGGATACTCCAACAGATCAGGCACAGAGGACATTCGGTTACATGACAACTTGTTACAAAGCCACAAATTCTAAAGACAGTCTTGTCTACATACTTCGAAGAATACACGcttttcGACTTGTGAATGCCAAATCCATGTTTCTTGTCGATCAGTGGAAAAAAATCAGCCACTCAAACCTCGTCAGTCTCAGAGAGGTTTTCACGACGAAAGCATTTGGAGATAACTCACTCGTCTTTGTTTACGACTACCATCCTGGAGCGGAAACGCTTCTTATGAGGCACTTCTCGGGCCCTGATTCCACTCTCGCTGTGGGCCCCGATGGTACGTTATTGTTTCCTTCGAATCCCCGCACCGGTGGAATCCCCAACAGACACAGACCCGGCGGGCACCGAAGTCCAATGCCCGAGAGATTGATATGGAGTTACATTATCCAGCTGTCCTCGGCACTGAGAACGGTACACGCATCTGGCTTGGCTTGTAGAGTCATTGACCCTTCCAAGATTTTATTAATTGGAAACTCAAGACTTAGAATAAACGGCTGTGGCATATTTGATGTTCTCAGTTTCGACGCCAGTAACAGTCCAAACGCTATGATTCCTCATTTTCAGCAAGAAGATCTCACTTCGCTTGGTAAGCTGGTCCTTGCCTTGGCGTGTTATTCTCTCCAAGCCGTTCAACGAGAACATATTCAACAGTCATTGGAATATATGGCGATGAACTACTCGTCAGATCTTAAAAATCTTATCATATATCTTTTAAGCAGTCCTCTCCCATCGCATATGAAGAGTGTGAATGACATCATGCCGATGATTGGCGCAAGATTCTACACACAACTGGATGCTGCTCAAGTCAAGTGCGATGTTTTGGAGGGTGAATTGGCCAAGGTACAGGCTCTTAGAAAAATTTCGCCAATCTTTGGGTGGTCTTTGGTAGACTACATATGATAAAAGATTGTGTTTTATACTCTAGGATTTAGGAGGTCCATCTCGTATAAGCCTTGTGGTTTCTTATGGCCCTCCTTGCCGCTTCtactaattttatgaatgtatttattatttcgtgatgtgtattactaattgtggctaaataataaactgaaactgatATGTCTTCGGAAAAGTTTCACAGATTGAGTTGAAGTCTAGCTAAGAAATCTTCGGAAGACCTCGGAAACGACTCGCGCTCTTTGGGTTTCTACATTCTAACTTGGAAACTGGAAACTTCATTtttagcaaacaaaaaaattgagcTTGTTTTAAGTGTTATTCAAAGTAAACATATATAAAAATCAAAGTAATAGTCATGTCTGATCTTTTATCGTTTTTGAAAGGTGAAGAACTGCTAATGTTAGGTTGCTTCCGCTTTGGTTTAGGAAATGGAGAATGGCCGTCTTTTTAGAATCCTCTGCAAGATGGGAACCATCAACGAACGACCAGAGTAGCTAagctttttgttttactatttATTAAACAGCTTTATAACTTTTTGAGACGTATGCACTGTTAGCTAAGGAACGCCAGCAGGTGGCATCTGACTCGTTCCCACTCTTTTGTAGGTTCAGCATGGATCCAAGTTGGTCGGAGACTGGTGACCGATATCTGTTAAAGTTGTTTAGGGACTATCTGTTCCATCAAGTGACGGAGAGCGGAGCACCGTGGGTAGACCTAGCTCATATTGTTGTCTGCCTAAACAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L1C7	PAN2-PAN3 deadenylation complex subunit pan3 OS=Xenopus tropicalis OX=8364 GN=pan3 PE=2 SV=1
Q640Q5	PAN2-PAN3 deadenylation complex subunit Pan3 OS=Mus musculus OX=10090 GN=Pan3 PE=1 SV=4
Q58A45	PAN2-PAN3 deadenylation complex subunit PAN3 OS=Homo sapiens OX=9606 GN=PAN3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005429 (this species only)
Transcription factor family	zf-CCCH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR030844 all species →	Family	PAN2-PAN3 deadenylation complex subunit PAN3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12272 all species →	DEADENYLATION COMPLEX SUBUNIT PAN3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0008143 all species →	Molecular Function	poly(A) binding	Interproscan
GO:0031251 all species →	Cellular Component	PAN complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000045066.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.