Gene detail

Detailed information of ENSAVKP00000056997.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: KAJ7383193.1, CCR4-NOT transcription complex subunit 1 [Desmophyllum pertusum]
Species Catalaphyllia jardinei · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000063241

agcttctttccaattgcttaaattggaaatttactgcgatgatcactgaTCACTGAATGCTGAAACAAGAATTCTGTTTTCTAGGTTCGTTTGTGATTGTCCACCCGAGCTTAAGTTTAACGTGGACGCCATTGACATTATGATTCGAAGCCACTTGCTCAACATGAGGGAATTTGATCTTCACCTCGTACAGtgtatAGATAATGGGCACAATCTGCAGGCGCTTCACTTTGCCATCCAGCTTGCTAAATACGTGACTGACGAAAAGCACAGTCCACACGTCACAGAGAATGATCTTTATCACACCATTGAAGCTCTGACGAGAATAGCTCACAGCAGGCAGAATTCTGAAGGTTTGTCGTCGTTATTGGAAGCCACACACAACGGTCCTGTGTCGCAGTCCGTCGGTGCACACCACGAAATGGGAGACAACAAGGCGCCTGGAGGGCCCACATCTCTGACGTCAGGGGTGTCTTCAGGGGTGCCCAGCAGCACGTTCCATGGTTACGAGGATCCACCTGGTTTGCAAGAAAAGGTTGAGTACTTGTTGAGAGAATGGGTTCGGCTATGCCACCAGCCTGGAGCCGGGAAAGAAAGTGAAAAGGCCTTCTCGACCTTTGTTGCTCTGCTTCACCAGCAGGGAATTCTTCGAACGGATGATCTGATCACGAGGTTTTTCCGAATCAGTACGGAGCTGTGTGTGGAGGTGACATACAGAGCTCTTGGCGATCACCCCAATAGTCCCACCATGGCGCGTGCTAAGTGTTATAACACCCTAGATGCGTATTGTCGGTTAATAGCTCTCCTAGTGCGTCACTCGGGAGATGCCTCTAACAACGTGACAAAGATTAATCTCCTCAGTAGGGTCCTTGGTACAGTCGCCACCGTGTTGTTCCAAGATCACGAGATTCGTCACACGGAATTTCAACAGCTGCCTTATCACCGAATATTTATTATGCTGCTGGTGGAGCTCAACCAACCTGAACCCATTCTAGAGGCCATTAATTTCCAGGTCCTTCAGACATTCAGCACTGTGTTCCATGCTCTTCGGCCATCCCGTGCGTCAGGGTTCGCGTACGCCTGGCTCGAGCTAATCTCGCATCGTCTTCTGATGTCCAAGCTTCTACTGAACACACCTCAACAGAAGggCTGGGTTTTGTTTCAACAGCTCTTGATCGACCTATTCAAGTTTTTGGCTCCATTCTTAAGGAACGCAGAGCTGGCTAAACAGACACATTTGCTTTACAAGGGCACATTGCGCGTGTTACTGGTGCTCCTGCACGACTTCCCAGAATTCCTGTGTGATTACCACTTCAGTTTCTGTGACGTCATTCCTCCTAACTGCATCCAAATGCGAAACCTCATCCTCAGTGCCTTTCCACGGAACATGAGGCTCCCAGACCCCTTCACGCCAAACCTCAAGGTTGATTTGCTGACCGACATCGCCCATTCACCGCGTATTCTGACCAACTTCGCGTCGGCTATCCAGCCCGCCAGCTTTAAGAAGGATTTGGATTCGTACCTAAAGACTCGCGCTCCAGTGACTTTCCTGACAGAACTAAGAACGCACTTGCAGGTATCTAATGAACCTGGAACACGATACAACGTGCCTCTCATGAACGCGTTAGTTCTGTACGTCGGCACACAGGCCATCACGTACATTCACAGCAAAAGCGGCACCCCCTCCATGTCGACCATCACTCATTCGTCTCACATGGATATCTTCCAGAACTTGGCTGTGGACCTGGATACTGAAGGGCGATACCTGTTCCTCAATGCAATTGCAAACCAGTTACGCTATCCAAACAGCCACACGCACTACTTCAGCTGTGTTCTGCTGTACCTGTTTGCAGAAGCCAACACAGAAGCCATTCAAGAACAGATCACAAGGGTTTTGTTAGAGCGACTGATTGTGAACAGGCCTCATCCATGGGGTCTTCTCATCACCTTCATCGAGCTCATTAAGAATCATCAATACAAGTTTTGGACACACGAGTTCGTCCACTGCGCCCCCGAGATTGAAAAGTTGTTCGAGTCTGTTGCACGGAGCTGTATGCAGCAGAAACAGGCGCCTCCCAGGGAAACTACTGAAAGCAGAGAGTGAAGACCCTTGTATCTTGTTGTAAAATTTGTACATGAAACGACGTTGATCGCCTGTGAGCAGGCGCTGACAGGCACTTCAGTGTAacttaaaatattatgaaaatttttTGCCGACTTAATTTTTTATCGTGGAATGCTCAATAAATAAACGCCTTGGAGTGCAATCTttggtgttttgttttcgtgaag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5YKK6	CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2
Q6ZQ08	CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2
A0JP85	CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=cnot1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002577 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04054 all species →	Not1	CCR4-Not complex component, Not1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040398 all species →	Family	CCR4-NOT transcription complex subunit 1	Interproscan
IPR007196 all species →	Domain	CCR4-Not complex component, Not1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13162 all species →	CCR4-NOT TRANSCRIPTION COMPLEX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000288 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030015 all species →	Cellular Component	CCR4-NOT core complex	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12604	CNOT1, NOT1; CCR4-NOT transcription complex subunit 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.