Gene detail

Detailed information of ENSAVKP00000056997.1 in Catalaphyllia jardinei

Genomic Location: :...
NR annotation: KAJ7383193.1, CCR4-NOT transcription complex subunit 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAVKT00000063241

agcttctttccaattgcttaaattggaaatttactgcgatgatcactgaTCACTGAATGCTGAAACAAGAATTCTGTTTTCTAGGTTCGTTTGTGATTGTCCACCCGAGCTTAAGTTTAACGTGGACGCCATTGACATTATGATTCGAAGCCACTTGCTCAACATGAGGGAATTTGATCTTCACCTCGTACAGtgtatAGATAATGGGCACAATCTGCAGGCGCTTCACTTTGCCATCCAGCTTGCTAAATACGTGACTGACGAAAAGCACAGTCCACACGTCACAGAGAATGATCTTTATCACACCATTGAAGCTCTGACGAGAATAGCTCACAGCAGGCAGAATTCTGAAGGTTTGTCGTCGTTATTGGAAGCCACACACAACGGTCCTGTGTCGCAGTCCGTCGGTGCACACCACGAAATGGGAGACAACAAGGCGCCTGGAGGGCCCACATCTCTGACGTCAGGGGTGTCTTCAGGGGTGCCCAGCAGCACGTTCCATGGTTACGAGGATCCACCTGGTTTGCAAGAAAAGGTTGAGTACTTGTTGAGAGAATGGGTTCGGCTATGCCACCAGCCTGGAGCCGGGAAAGAAAGTGAAAAGGCCTTCTCGACCTTTGTTGCTCTGCTTCACCAGCAGGGAATTCTTCGAACGGATGATCTGATCACGAGGTTTTTCCGAATCAGTACGGAGCTGTGTGTGGAGGTGACATACAGAGCTCTTGGCGATCACCCCAATAGTCCCACCATGGCGCGTGCTAAGTGTTATAACACCCTAGATGCGTATTGTCGGTTAATAGCTCTCCTAGTGCGTCACTCGGGAGATGCCTCTAACAACGTGACAAAGATTAATCTCCTCAGTAGGGTCCTTGGTACAGTCGCCACCGTGTTGTTCCAAGATCACGAGATTCGTCACACGGAATTTCAACAGCTGCCTTATCACCGAATATTTATTATGCTGCTGGTGGAGCTCAACCAACCTGAACCCATTCTAGAGGCCATTAATTTCCAGGTCCTTCAGACATTCAGCACTGTGTTCCATGCTCTTCGGCCATCCCGTGCGTCAGGGTTCGCGTACGCCTGGCTCGAGCTAATCTCGCATCGTCTTCTGATGTCCAAGCTTCTACTGAACACACCTCAACAGAAGggCTGGGTTTTGTTTCAACAGCTCTTGATCGACCTATTCAAGTTTTTGGCTCCATTCTTAAGGAACGCAGAGCTGGCTAAACAGACACATTTGCTTTACAAGGGCACATTGCGCGTGTTACTGGTGCTCCTGCACGACTTCCCAGAATTCCTGTGTGATTACCACTTCAGTTTCTGTGACGTCATTCCTCCTAACTGCATCCAAATGCGAAACCTCATCCTCAGTGCCTTTCCACGGAACATGAGGCTCCCAGACCCCTTCACGCCAAACCTCAAGGTTGATTTGCTGACCGACATCGCCCATTCACCGCGTATTCTGACCAACTTCGCGTCGGCTATCCAGCCCGCCAGCTTTAAGAAGGATTTGGATTCGTACCTAAAGACTCGCGCTCCAGTGACTTTCCTGACAGAACTAAGAACGCACTTGCAGGTATCTAATGAACCTGGAACACGATACAACGTGCCTCTCATGAACGCGTTAGTTCTGTACGTCGGCACACAGGCCATCACGTACATTCACAGCAAAAGCGGCACCCCCTCCATGTCGACCATCACTCATTCGTCTCACATGGATATCTTCCAGAACTTGGCTGTGGACCTGGATACTGAAGGGCGATACCTGTTCCTCAATGCAATTGCAAACCAGTTACGCTATCCAAACAGCCACACGCACTACTTCAGCTGTGTTCTGCTGTACCTGTTTGCAGAAGCCAACACAGAAGCCATTCAAGAACAGATCACAAGGGTTTTGTTAGAGCGACTGATTGTGAACAGGCCTCATCCATGGGGTCTTCTCATCACCTTCATCGAGCTCATTAAGAATCATCAATACAAGTTTTGGACACACGAGTTCGTCCACTGCGCCCCCGAGATTGAAAAGTTGTTCGAGTCTGTTGCACGGAGCTGTATGCAGCAGAAACAGGCGCCTCCCAGGGAAACTACTGAAAGCAGAGAGTGAAGACCCTTGTATCTTGTTGTAAAATTTGTACATGAAACGACGTTGATCGCCTGTGAGCAGGCGCTGACAGGCACTTCAGTGTAacttaaaatattatgaaaatttttTGCCGACTTAATTTTTTATCGTGGAATGCTCAATAAATAAACGCCTTGGAGTGCAATCTttggtgttttgttttcgtgaag

Protein

Uniprot

Uniprot term	Description
A5YKK6	CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2
Q6ZQ08	CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2
A0JP85	CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=cnot1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04054	Not1	CCR4-Not complex component, Not1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040398	Family	CCR4-NOT transcription complex subunit 1	Interproscan
IPR007196	Domain	CCR4-Not complex component, Not1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13162	CCR4-NOT TRANSCRIPTION COMPLEX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000288	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030015	Cellular Component	CCR4-NOT core complex	Interproscan
GO:0060090	Molecular Function	molecular adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12604	CNOT1, NOT1; CCR4-NOT transcription complex subunit 1	-	Messenger RNA biogenesis	ko03019	deepkoala