Genomic Location: :...
NR annotation: CAB3979445.1, collagen alpha-4(VI) chain-like, partial, partial [Paramuricea clavata]
| CDS | ||||
| ENSBQFT00000002695 | ||||
| Transcript |
| - |
| Protein |
| ENSBQFP00000002388.1 |
| Uniprot term | Description |
|---|---|
| A8TX70 | Collagen alpha-5(VI) chain OS=Homo sapiens OX=9606 GN=COL6A5 PE=1 SV=1 |
| A6H584 | Collagen alpha-5(VI) chain OS=Mus musculus OX=10090 GN=Col6a5 PE=1 SV=4 |
| Q60847 | Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12947 | EGF_3 | EGF domain | Domain | Interproscan |
| PF00092 | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF12662 | cEGF | Complement Clr-like EGF-like | Domain | Interproscan |
| PF00007 | Cys_knot | Cystine-knot domain | Domain | Interproscan |
| PF03160 | Calx-beta | Calx-beta domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001881 | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR024731 | Domain | EGF domain | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR006207 | Domain | Cystine knot, C-terminal | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR002035 | Domain | von Willebrand factor, type A | Interproscan |
| IPR018097 | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR026823 | Domain | Complement Clr-like EGF domain | Interproscan |
| IPR009030 | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR038081 | Homologous_superfamily | CalX-like domain superfamily | Interproscan |
| IPR003644 | Domain | Na-Ca exchanger/integrin-beta4 | Interproscan |
| IPR006208 | Domain | Glycoprotein hormone subunit beta | Interproscan |
| IPR050525 | Family | Extracellular Matrix Assembly and Organization | Interproscan |
| IPR000152 | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24020 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0007154 | Biological Process | cell communication | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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