Detailed information of ENSBQFP00000004263.1 in Heliopora coerulea

Genomic Location: JASJOG010000006.1:4009533...4122509
NR annotation: XP_028395286.1, A-kinase anchor protein 9-like isoform X2 [Dendronephthya gigantea]
Species Heliopora coerulea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99996A-kinase anchor protein 9 OS=Homo sapiens OX=9606 GN=AKAP9 PE=1 SV=4
P48725Pericentrin OS=Mus musculus OX=10090 GN=Pcnt PE=1 SV=2
O95613Pericentrin OS=Homo sapiens OX=9606 GN=PCNT PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001870 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10495
all species →
PACT_coil_coilPericentrin-AKAP-450 domain of centrosomal targeting proteinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019528
all species →
DomainPericentrin/AKAP-450 centrosomal targeting domainInterproscan
IPR005539
all species →
DomainELK domainInterproscan
IPR028745
all species →
FamilyA-kinase anchor protein 9/PericentrinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44981
all species →
PERICENTRIN-LIKE PROTEIN, ISOFORM FInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0007165
all species →
Biological Processsignal transductionInterproscan
GO:0060090
all species →
Molecular Functionmolecular adaptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSBQFP00000004263.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of ENSBQFP00000004263.1 across 37 RNA-seq samples of Heliopora coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

37Samples
36TPM > 0
6Conditions
40.5Max TPM
11.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Whole coral 17 16 5.17 10.61
polyp and skeleton · 31C, 3week 6 6 12.72 22.49
polyp and skeleton · 28C, 3week 6 6 20.31 40.49
polyp and skeleton · 26C, 3week 4 4 14.43 19.73
polyp and skeleton · 28C, 24hr 2 2 30.58 39.86
polyp and skeleton · 31C, 24hr 2 2 7.83 9.70

Per sample · hover a bar for the full sample record

Show the sample table (37 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
ERR6178777 Whole coral Whole coral not recorded not recorded ERP120267 10.61
ERR6178772 Whole coral Whole coral not recorded not recorded ERP120267 9.77
ERR6178782 Whole coral Whole coral not recorded not recorded ERP120267 9.23
ERR6178776 Whole coral Whole coral not recorded not recorded ERP120267 7.56
ERR6178779 Whole coral Whole coral not recorded not recorded ERP120267 6.90
ERR6178771 Whole coral Whole coral not recorded not recorded ERP120267 6.45
ERR6178770 Whole coral Whole coral not recorded not recorded ERP120267 5.99
ERR6178781 Whole coral Whole coral not recorded not recorded ERP120267 5.74
ERR6178389 Whole coral Whole coral not recorded not recorded ERP120267 5.06
ERR6178783 Whole coral Whole coral not recorded not recorded ERP120267 4.32
ERR6178387 Whole coral Whole coral not recorded not recorded ERP120267 4.21
ERR6178774 Whole coral Whole coral not recorded not recorded ERP120267 3.77
ERR6178773 Whole coral Whole coral not recorded not recorded ERP120267 2.75
ERR6178778 Whole coral Whole coral not recorded not recorded ERP120267 2.66
ERR6178388 Whole coral Whole coral not recorded not recorded ERP120267 1.79
ERR6178780 Whole coral Whole coral not recorded not recorded ERP120267 1.04
ERR6178775 Whole coral Whole coral not recorded not recorded ERP120267 0.00
SRR12587800 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 22.49
SRR12587804 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 19.79
SRR12587799 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 11.07
SRR12578066 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 10.24
SRR12578068 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 6.55
SRR12578065 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 6.21
SRR12578067 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 40.49
SRR5949849 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 32.62
SRR12587802 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 22.28
SRR12587808 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 10.16
SRR12587807 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 10.04
SRR12587803 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 6.26
SRR12587805 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 19.73
SRR12587801 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 17.60
SRR12587798 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 11.15
SRR12587806 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 9.23
SRR5949850 polyp and skeleton · 28C, 24hr polyp and skeleton not recorded 28C, 24hr SRP115860 39.86
SRR12578063 polyp and skeleton · 28C, 24hr polyp and skeleton not recorded 28C, 24hr SRP115860 21.30
SRR5949848 polyp and skeleton · 31C, 24hr polyp and skeleton not recorded 31C, 24hr SRP115860 9.70
SRR12578064 polyp and skeleton · 31C, 24hr polyp and skeleton not recorded 31C, 24hr SRP115860 5.96

Source: CnidoSite RNA-seq expression matrices (HCOER_TPM, StringTie quantification over 37 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Heliopora coerulea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated21ENSBQFP000000268040.923440967160606
Negatively correlated9ENSBQFP00000018742-0.765631347915723

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list. Partner counts were matched on ENSBQFP00000004263, the spelling this network uses.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Heliopora coerulea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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