Gene detail

Detailed information of ENSBQFP00000006276.1 in Heliopora coerulea

Genomic Location: :...
NR annotation: CAB4015715.1, low-density lipo receptor-related 4, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSBQFT00000006894

ATGAATCGATATTTATTTGCTTGCTTTATTTCAGCGGATGCTCCATCGTCATGTAAGTCGGATGAATTCCAGTGCGTTAAGGACGGATCATGTGTCAAACAATCTTGGAAATGTGACAAAGAAAAAGATTGCCCTGATGCATCTGATGAAATGAACTGTGAATACACCGCATGTGGTCCTGACAGTTCCATGTTTCCCTGTCATAACGGAGACTGTATTCCGTTGCCGTGGAAATGTGATGGTGAATATGACTGTCGTGATAAGTCTGACGAGCTCGGCTGTGGAATATCACCAATTTCTCCTTCGAGATGCAGACAAGATCAATATGAATGCGACGAAATGTGTATCTCCAGTAACCAGATATGTGATGGAAACCATGACTGTCCTGACAAGTCGGATGAAACCATATGCCAAGAATACATACTGTACAGCAAACAGAACAGCATCAACAAATTGAACATTTACAATTTGCTCTCAGAGGTTCTCATCAGTTCATTACCAAATGCTGTTGCTCTTGACATCGACTTGAGTGAAGGACGTGTCTACTGGACCGATATCGTTCACGATAATATTCAGAGAGCATTGCTCGGCGAATCTAATAATCGTTCTCTTGAAACAGTCATTCAGTTCAATTTAGAAAGTCCAGAAGGCATAGCGATTGACTGGGTTGGCAAAAAATTGTATTGGACCGATCGATTGCCAGGGAAAATAGAAGTTGCCGAACTTGATGGTAAAAACCGTGCTGTGTTAATTAGTGAGGATGTTTACCAGCCAAGAGCAATTGTCGTTGATCCTAAAACAAGAAATTTATTTTGGACTGAATGGGGCCAGAATGCTCAAATTGAAAAATGTGGAATGAATGGAGATCCAAACACTCGACAGATCCTCGTTTATAAGAATATTAGATGGCCaaatggtttagcaattgaTTACCAAACAGAAAGGTTATGGTGGGTGGATGCGAAACTTGCAAACATTGAAAGTGTCAATTTAGATGGAACAGATAGAAGAACAATAATAAGCAGCCCCGATAGTACACTTGGTCATCCTTTCTCTTTAGCTGTCTTTGGAGAGAGCATATTTTGGACAGACTGGAGTCAAAAGGTAATTTATCAATCCACTAAGAAGGATCCTGATGACAAAAGAATTCTGAAAGGTGTAGATGACTTGTTACCAATGGATATAAAAGTTGTTCATCCACATCAACAGCCAAGAGAACTAAATCCTTGTGGTCTGAATAATGGCCAATGCAGTCATCTGTGTTTACTTTCTCCAAACCAAAAACAACCATTCTCGTGCTTCTGTCCTACTGGAATGAAGTTGTGGAAAGACGACAAGACGTGCACGATAGAAGATAATCAACCGTACATCCTGTTTGCCAATAGTGTTGGAATATTTTATGCCGACGTTAGTTTGAAACACGTAAGTCCCGTTTTGGCAGGAATTGCAGGTGGGGCTGCTGCACTGGATGTTGATTTAAAGGATAAACACGTATATTGGTCTAACGTGGTGAATGATACCATAGAACGTGTTTCTCTAAGTCACATCGGTGCTGTCGAGTCTATTATTAGTAGTGATTTAAAACTCGTAGATGGAATTGCCTTTGACTGGATAAATCGGAAGTTATACTGGACGGATGGTAGGAGAAGGGTTATTGAAGTAACGGACGCAGACGAAACCAATATGAGGCTCACTCTAGTTAAAGAAGGACTTGACAAGCCAAGAGCTATCGTGCTACATCCAAAAACAAGATACATGTATTGGACAGACTGGGGAGTTAATCCGAAAATCGAGAGATGTGGCATGAATGGTGACCTTACTACTCGCGAAACTGTGGTAAAAGGGAAGTTTGGTTTCCCTAATGGGTTAGCAATTGATTACGTTGAAGATAAACTATGGTGGGCTGATGCCATGTTGGACAAGATTGAAACAGCAAACTTAGATGGAACAATGAGGAGGGTTGTCGTGAAAGAACCTTCAATCCATCCATTTGGTTTGGTTGTTTATAATAATTCAATTTTCTGGACTGACTGGGTGGACAATACTATTTTCAAGGCTGATAAATTAGCTGGTAAGATATACTTTTCAAAAGACGTAGGGATTTTCAGACCAACTGGAATAAGAGTCGTTCACGAACAACTGTATCCTCCAGAACAAAATCCTTgcggaagaaaaagaaaaggttgCAGTCATTTGTGTCTGCTAACACCCAAGCATCCACATCACAGCTGCCATTGTCCGAATGGAATGACACTTCTTCCTGATGAAAAATCTTGTCGTTAG

Transcript

Protein

Uniprot

Uniprot term	Description
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
P98158	Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1
A2ARV4	Low-density lipoprotein receptor-related protein 2 OS=Mus musculus OX=10090 GN=Lrp2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan