Gene detail

Detailed information of ENSBQFP00000010198.1 in Heliopora coerulea

Genomic Location: :...
NR annotation: CAB4035006.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSBQFT00000011348

ATGGAGGAGAAATGGTCAATCGATAAACTAGATGGGAACAACTGGAGTACTTGGAAATTCCAAATGAAACATTTACTCATGGCGAAAGGTCTTTGGAGTTTAGTAGATAGTTCTGAGACACTCGAAAACGAAAAAGCGTTCTCAACAATTGTGTTGGTCATCAATACCCCGAAGCAAGCAAGGGATACATTGAGGAATCATTTCGAAAGAGAGACTCTGGCgaataaattgttttcaaagaaGCAGTACTTTCGAACCGAAATGAGGGAAGGCATGTCTATGGAGCAGCCTTTGAAACACATGAAAGATATTAGTGACAGACTAGCGGCGATTGGAGTACCCATCTCTGAAGGGGATCAGGTAGTGACCTTGTTGGGGAGTTTACCAAGAAGTTATGCGACTCCTGTAACTGCCCTGGAAGCAAAAGTGGGTGACATTAGCATGGATTTTGTTCAGCAAGCTCTCATACATGAGGAAATAAAGCAAGCTGAAATATCCGGTCAGTCAAGTGAAACTGAGTCTGCGCTGGCGGAAGTCCCAAAGAGAACTAAGCCACGTGAGGTGCCCGCAAGTTTTCGATGGGGTGTAGCTGGCCATATTCGCCGTAATTCCAAGGCTGCCAAGAATCGGAAGGACCAACAGCAAGTATCTGACAATGAAAGCGAAGACTGTAATGCTGATACATTTACAGCTTCTGTTGGAGGTGTGAAGTCCAATAAAATATGTCAAGGGCTTATCGACTCGGGAGCATTTAGTCATATGAAGGAGGGAAAGGGCGTGTTGGTGAACTTTAAACAGTTTGAGCATGAAAAAGTTGCTTTGGGAGACGGCCGAATTGTGGAAGCAGTGGGATGTGGTAACGTGTACATGAACAAGTGTCTTGGGGAAAGTAAGTTAACGGGAGCTATTTTGTACAATGTATTGTACGTACCTAAACTTGCTTGCAACTTGTTTTCTGTACGAGCAGCAGTGTTAGAAGGCAACACGGTGGAGTTTGGTCATAGTAAGTGTTGGATCAGGGACGCAGGTGGAAAACTTCGTGGAATGGGATCCCTCAATGGACAAACTGTTTCAATTAAATTGTTAAGTCGTACCCTGTACCAACGTCTAGGCCATGTGCACGAGCAGCGTATGAAGAAATGCATTGAGAAGGGAATGATACAAGGTATTAGTGCTCAAAAAAAGATGGGACTGTCATTTTGTGATGAATGTATAGCAGGAAAGATGCATTGCAAAACGTTTCCTCTGCAACTAGTACACAGTGATGTATGTGGTCCAATGCATGTTGAATCAAATGGTGGAGCAAGGTATCTCGTCACGTTTACTGATGACTTCACTCGATTTTtatttgataaatttaaagaatttgaagCTGTGCCAACCAACGACGAGGACGAGATGATAGGAACTCTGCGAACGGATAATGGATGGCGAGTATATGAATTAGACATGGTGTTGACAGCACCACATTCACTTCAGCAGAACGGCGTAGCAGAACGGATGAATCGAACTTTAATCGAGTCGGCTCGCTCAATGATCGCGCATGCCGCATTGCCTAACCTGTATTGGGCTGAAGCCACATCTACGGCTACCCATATAAGAAACCGGATGCCTACGGCAGCGATAAAGGAGAACAAAACTCTTTACGAACGGTGGTACGGAAAGAAACCGGATGTAAGCCGTCTACGTGCTTTCGGATGTATAGTTTATGCCGACGTTCGGGACAAGGATCGACGAAAACTAGACaagaaagtgaagaaaatgTGTTTCGCTGGTTACAGTCTGACTTCAAATGGATATCGTCTATTTGATGAGATGAGCCGGAAATTGTTTATCCGCCGAGATGTCGAAtttaatgaaaatgaatttggtCACAAGgaagcaataacaataacagatCCAATCGCAGAACCAAAGCAAGCAGTCGAAGATGTGAAACAAGAAGCAGTCACAATCGAGAGAGAAGCAGATGAAGAGCAAGCGTCAGATGAGCCTCGTCGACCTGGAAGATCACGAGGAGTACCAGTCAGATATGcgtgcATTTATAACATTTACAAGAATGTGCAGCTATATACATAA

Transcript

Protein

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P0C2I3	Transposon Ty1-DR6 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-DR6 PE=3 SV=1
Q07793	Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-DR4 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10807	RRM1; ribonucleoside-diphosphate reductase subunit M1	EC:1.17.4.1	DNA repair and recombination proteins	ko03400	deepkoala