Detailed information of ENSBQFP00000012843.1 in Heliopora coerulea

Genomic Location: JASJOG010000026.1:918394...932415
NR annotation: XP_046859273.1, LOW QUALITY PROTEIN: bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1-like [Xenia sp. Carnegie-2017]
Species Heliopora coerulea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q60967Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Mus musculus OX=10090 GN=Papss1 PE=1 SV=1
O43252Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens OX=9606 GN=PAPSS1 PE=1 SV=2
O95340Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Homo sapiens OX=9606 GN=PAPSS2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003214 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01583
all species →		APS_kinaseAdenylylsulphate kinaseDomainInterproscan
PF14306
all species →		PUA_2PUA-like domainDomainInterproscan
PF01747
all species →		ATP-sulfurylaseATP-sulfurylaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002891
all species →		FamilyAdenylyl-sulfate kinaseInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR025980
all species →		DomainATP-sulfurylase PUA-like domainInterproscan
IPR002650
all species →		FamilySulphate adenylyltransferaseInterproscan
IPR024951
all species →		DomainSulphate adenylyltransferase catalytic domainInterproscan
IPR015947
all species →		Homologous_superfamilyPUA-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11055
all species →		BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000103
all species →		Biological Processsulfate assimilationInterproscan
GO:0004020
all species →		Molecular Functionadenylylsulfate kinase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0004781
all species →		Molecular Functionsulfate adenylyltransferase (ATP) activityInterproscan
GO:0050428
all species →		Biological Process3'-phosphoadenosine 5'-phosphosulfate biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13811PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthaseEC:2.7.7.4
EC:2.7.1.25
Monobactam biosynthesisko00261deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of ENSBQFP00000012843.1 across 37 RNA-seq samples of Heliopora coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

37Samples
37TPM > 0
6Conditions
193.3Max TPM
94.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Whole coral 17 17 105.44 193.26
polyp and skeleton · 31C, 3week 6 6 71.40 126.04
polyp and skeleton · 28C, 3week 6 6 101.83 144.91
polyp and skeleton · 26C, 3week 4 4 90.16 145.97
polyp and skeleton · 28C, 24hr 2 2 93.50 97.08
polyp and skeleton · 31C, 24hr 2 2 58.42 74.40

Per sample · hover a bar for the full sample record

Show the sample table (37 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
ERR6178781 Whole coral Whole coral not recorded not recorded ERP120267 193.26
ERR6178388 Whole coral Whole coral not recorded not recorded ERP120267 121.56
ERR6178775 Whole coral Whole coral not recorded not recorded ERP120267 120.20
ERR6178773 Whole coral Whole coral not recorded not recorded ERP120267 116.63
ERR6178774 Whole coral Whole coral not recorded not recorded ERP120267 108.89
ERR6178778 Whole coral Whole coral not recorded not recorded ERP120267 107.71
ERR6178780 Whole coral Whole coral not recorded not recorded ERP120267 106.45
ERR6178777 Whole coral Whole coral not recorded not recorded ERP120267 105.37
ERR6178389 Whole coral Whole coral not recorded not recorded ERP120267 104.29
ERR6178776 Whole coral Whole coral not recorded not recorded ERP120267 103.74
ERR6178783 Whole coral Whole coral not recorded not recorded ERP120267 101.66
ERR6178387 Whole coral Whole coral not recorded not recorded ERP120267 94.77
ERR6178771 Whole coral Whole coral not recorded not recorded ERP120267 87.55
ERR6178770 Whole coral Whole coral not recorded not recorded ERP120267 84.90
ERR6178779 Whole coral Whole coral not recorded not recorded ERP120267 81.04
ERR6178782 Whole coral Whole coral not recorded not recorded ERP120267 80.79
ERR6178772 Whole coral Whole coral not recorded not recorded ERP120267 73.71
SRR12578065 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 126.04
SRR12578066 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 71.20
SRR12587804 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 66.02
SRR12587800 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 58.16
SRR12578068 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 55.71
SRR12587799 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 51.26
SRR12578067 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 144.91
SRR5949849 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 115.26
SRR12587802 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 99.95
SRR12587803 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 93.80
SRR12587808 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 81.30
SRR12587807 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 75.77
SRR12587801 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 145.97
SRR12587806 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 82.11
SRR12587805 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 71.85
SRR12587798 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 60.69
SRR5949850 polyp and skeleton · 28C, 24hr polyp and skeleton not recorded 28C, 24hr SRP115860 97.08
SRR12578063 polyp and skeleton · 28C, 24hr polyp and skeleton not recorded 28C, 24hr SRP115860 89.93
SRR12578064 polyp and skeleton · 31C, 24hr polyp and skeleton not recorded 31C, 24hr SRP115860 74.40
SRR5949848 polyp and skeleton · 31C, 24hr polyp and skeleton not recorded 31C, 24hr SRP115860 42.43

Source: CnidoSite RNA-seq expression matrices (HCOER_TPM, StringTie quantification over 37 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Heliopora coerulea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated4ENSBQFP000000316130.782277935452214
Negatively correlated23ENSBQFP00000044789-0.65456670101512

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list. Partner counts were matched on ENSBQFP00000012843, the spelling this network uses.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Heliopora coerulea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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