Gene detail

Detailed information of ENSBQFP00000016599.1 in Heliopora coerulea

Genomic Location: :...
NR annotation: CAB3977345.1, helicase SKI2W-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSBQFT00000018540

ATGGCAAATTATATATCTGAGTTGAAAGGATTCCTAAGCTACAAGGAAGATGTAGATCCTCAAAAACGTTTGGAAGACCTATTTGAGATATCAGAACTTGGTTGTAATGGCGTGCTGGAGATCGTACCTCGCGGAATATGCCAACGTTTGGAGTGCATTAATCACAGTGAACTTTCAAAGTTACCCAATGGATTACCACCAATATTTCCATCAAATCTTGAATTAGACCTGGAAGAATACTTAACTCATCCTGAAAAGTTACCAATCCACAACTTCTATGAATCACAAAGGTTTTGGCCAAGAAAGCAAAATCCAGGCTCCTTATACAATGCATCATTTTCACCTGTGCAAACCACTTTAAAAGTGCAACGAAACCCCAAAACCGGAGAACTTCTTGGCTATCAAGAGGTTGATGTTTTGAATGCAGATTGCACTAGTAAAAATTCCACATCTCTTCAGAGACTACCTGATCCACAGTTATCTGAAGTGAAAGGAAACCCCACAAACATTCCATTCCGACCAGGTGGTTTAGATGAACCAAGTACAATAAATCAAGTGAAAGAAGAAACTTCCAGTTTGGATTTTGAAAATGATCTGCTTTGCATTCCATCTGGATTTACCCATAAGATAACATTTACAAATGCTGAAAATGATGGTTCTTTAGGTGAGACCACTAAAGATAGAAAGGATGTAATCAATATTGGTGATATACTGGCAGAAGGTGTTGATTTGGGCAATGAGCTGGAAGATGAGGAAGAAGGAAACAGTACAGATGATCAGCAGCTGAAGGATGAAGTAGATTCTTCCATAAAAGACATCAATCAAAACACGTCTTCATTAAAGAAAAGTGATAGTCTTGAAAAACTGCTTGTTCAGAACAAACATCCAGagaatgaaaaggaaaataagagtGATTTTGTAGCAGAAGAGGAGGAAATCCAAGACTGGGCTGTAATGGTAAATGTTAAAGATCCTGTTAAGGACTTCGACAGTAAAGTACCAGTTATGGCCAAATCGTTTGGATTTCCATTGGATACATTTCAGAAGCAAGCTGTTATTCACCTGGAAAATAAGGAATGTGTGTTTGTTGCTGCTCATACATCTGCTGGTAAAACAGTCGTAGCTGAATATGCTATTGCATTAGCCAGTAAACACATGACAAAAACAATCTACACATCTCCTATCAAAGCCTTGTCAAATCAGAAATTCCGAGATTTCAAGGATAAATTTGAAAGTGTTGGTCTCATTACTGGTGATGTTCAGATCAACCCTGAGGCAAGCTGCCTTGTGATGACCACTGAAATTTTGAGGTCAATGCTATACCGTGGTTCCAAGGTAATTCGTGATACAGAATGGGTAATATTTGACGAGGTGCATTATGTGAATGATGTAGAGAGAGGTGTTGTATGGGAAGAGGTATTGATCATGCTACCTGACCATGTCAGCATCATTATGCTGTCAGCCACTGTACCAAACACGAAGGAATTTGCAGGATGGGTTGGGcgtattaaaaagaaaaagatctaTGTTATCAGCACAACGAAACGTCCGGTTCCCTTAGAACATTTTCTCTACACAGGTAATAGTACAAAGACAAGCAATGAATTGTTCAAAATTGTCGATAAGGttggaaagtttcttacaaACGGCTATAAGCTTGCTGCCGAAGCTAAAAACCAAAGGAGCAAGAAATCGAAGGACACATATGGACCTAAAGGAACGCGTTCTAAAGTCAGTCCAAATGAGGACCAAAATGTGTGGAATTCAATAGTTAAAATGCTTGAGAAAGTCAAACCTCCATCAACCAACAACCAGTTGCCGGTGGTGGGGTTCACTTTCTCAAGAACGCGGTGTGATGAAAATGCCGACAGACTGTCTCGCCTGGACTTAacaacaaacaaagaaaaacatgaaattcatATCTTCATTCAGAAATGTGTTTCTAGACTTAAAGACCAGGATGGACAGTTACCCCAGACTAGTGTTAAAATTGGACATACTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q15477	Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
Q6NZR5	Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
O59801	Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC550.03c PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17911	Ski2_N	Ski2 N-terminal region	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040801	Domain	Ski2, N-terminal domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050699	Family	RNA/DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0055087	Cellular Component	Ski complex	Interproscan
GO:0070478	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan