Gene detail

Detailed information of ENSBQFP00000016640.1 in Heliopora coerulea

Genomic Location: not available for this species
NR annotation: XP_028416666.1, uncharacterized protein LOC114540716 isoform X1 [Dendronephthya gigantea]
Species Heliopora coerulea · all data for this species · gene families

Sequence

CDS

ENSBQFT00000018588

AtgaaacaagaaatgaaaattacCGTGTGTTTTGGGCCAACTAAAATCATTGTCCCTTGCGGAACACAACTACCTGTTCGGGAGCTCATACGAGAAGCCGTTGTACGGTATAGAAAGGTCACTAACAAACACCCTGATGATTATATTCATGTTCATTGTTTACAAACGTGCGACGAAGAAGCCATACTGGACGAAGACGACACAGTGGGCGATGTTCTCGATGACAAGGACAAGGTGATTGCCTCTTATGAGGAAAATTTGGGTTCTAGGCCAGGTCACAATGGAGGTGATGGTACAAGTGCATCTTCAGTTGGGACTGCCAGTCCAGATATATTCCAAGGAGAATTAAATGCATGTTGTCCAATTGATGGTATTGCTGTTTTAAATTCTGTATATTCTGATGAACAACATCAGGAGATGACTAATGAATGCAAAAAGCCTGCAAGTTCAATGGTGACTTATGTTGAAAGCTTCTCACCAAATGGATCacatttaaatttgaatgcCATGGAAAATTATGCTGAAGGTGTAAGGACATCAAGAAACAGGGGTGTTTTGGATGGGAAATCCTCTGGCTCAGATTTTGAAGGTTATGAAAGATTAAATGATGATAACAGTAGTGATCATAacaatgatgaagatgaaaatgaagTCTCTGCATTTACGAGAGAGCCTGCAAGGAAGTCTTTGAAAAGTGACCATCTGGACAGATGGATCAGTATGCAAGAATCTTATTCTGGGTATGAAAGACATGAACCAACTGGTGCTCCTCCTTCACCAGATTACAGATATACTCAAACAGAATCTGTTACAGGAGTTTCAAGACAAATTTCCCTGGCTTCATCTGAAACCAATGATGCAGAACACATCAACATTGTGCTTAAACCTACTGTGGGAGAGGATCTTGGCATAACAGTTCAAGGTTATAAAACTGCTGATGAAAGGGAACTTGGCCTGATTGTATTCCAAATTGATCCAAAGGGATGCGCGGCCCGTGATGGGCGTCTGCAGGTAGCTGACCGGATTGTTGCAGTGAATAGTCAAGACCTGACGAATATCAGCAATGACAGGGCAGAGGAAGCTTTTAGTAAAGCTCTACAGTGTGATACAATCGAGTTGAGTATTTCAAGATCTCATTCGTTTATTCCTGAAACCAAAACTGTTCTCAAGAGCCTGAGGGCGACATCTGAAGCAAGTGTTGTTTGCATTATCGATTGTTCTTTCAAGACAGTGTCTTCCAAGAACGAAACGGGTGAGACAGTTCCCAGAATCGTGGAAAAAAAGATCTATATAGACTTATTGAAAGGAAATGACGGTCTTGGCTTCAGTGTTACAACACGAGATAACCCGGCTGGTGGTAACTGTCCGATATATGTTAAGAATATTTTACCACATGGAGCCGCCATTCGTGATGGTCGCCTTATGGCTGGTGATCAGATTATTGAGGTTAATGGGGTGGAAATGACTGGTAAAACTCAAGACCAAGCTGTTACTATCCTGCGCAGCACGAAGGGCCAAGTAAAGTTACAGATCCTAAGAAAAGTTACCGTAACATCTTCCATCGGCTCCACGAAACTTATGAAAGATCTAAAAAGAGCTCCTTCGGACAGCCGAGGGAATAAAATCTTTACCTACCGAATACCGCTGCCCAGTTCCGGAACAGCTGGCTTAGGTATTACTGTCAAAGGGAAATCTAGTGCTGCAGAGCAGGAGACTGGTAATGATCGGGGAATATTTGTCAAAACAATAGTTCCTGGTGGTGCTGCACAACAGGATGGTAGATTATGTCCCAATGATCAACTAATTAGTGTAAACGGTGTCAAACTGACAGGAATGTCTAACTCGTCGGCCATGAAAACCCTTCGGTCAGCGATGGAAGCCAACATGTCAGGTTCAGTTGAAGTATCTGTCATTAGGAGTGTTCAGGAGATACTGAATAATGTGACGGAGTTAGAGACCATTGGACAACGGAGGAACAGCGACGGTGATCGCGCCATTGACGTTGTGGAAAGTAGAAAGACTTCTATTGTGAGAAATGAGGCAAAAGACTTGCTCGATGGACCTacatcaggaaaaaaagaagatGAGCAAATAAGAGCTCAGATGGTAAAAGATAAAGGTAACATGATTCCcatgttttcatttttagttGATGAAATCGCAGAATTAAACTCTTACCGGAAACCAGTGAAACTGGGAAATGGAGTTCATAGAAATCAGTCATACTATATCGCAATGAATCGCAGTGGGCAAAGAGGAGAAAGACACCCCAGCTCTGGTAGATCGTTAGCAAAGTCTCCTTTTTACCAGCCCCTTGAGGAATATTCAACTGTAACTGAACAGAATGTAGAAATAGCTCGTCCCTTCAATGATGAAAAGCCAAAAATAGTCATTGCTTCGTATACAGATGCTGCTAGAGTCTCTACACCTGCCCGGGCTTTTTGTATTTCATCAAGACCGACAAGTACAGTTGCCGAACCTACTCCGTCCATGAGTACAACGGGACCAACTAAGTCACGGGGCTCATCTGAAGCGAAGGTGGAAAAAGCACGTGACAAAAAATCATCTCGTCAATCTGATGCCACTCGGTCGAAGCGTCCTCCAGCGACCTTGCCGATCCCCAAAGGAACTcctccacctccacctccacGGACATCTAGACCTTCTCCTTACGCTAAACAGTTCCCTAATTATTTACCTCTTAATGCTCTTGCTTTGAGAAAGACTGATAGTAACTTCTCGGATTCTTCCGATGGTAGTGAAATATCTTCTGTTCTTCAAAGTCCTGGAGGAAGCACGAGCGAAGGGAAAATTCTGTCATCCGCAGAGGAAGAAACAAAAAACGGTGACAAATCTAACGTGTTGGTTGCCGAGGCAAAGATCGACTCGAAAATAGATGATAATTCTGATCATCATGCTGACGTGAGTGCAGATAATCTTACAGACGACGAAAGTGCTGAGGAACCTTTTCTGAGGGAAGGATTTGGACGACAGTCAATGtcagaaaaaagatttaaaTTAGCACAAGCAGATATCACTCAAACGGAATTTTACAAACAAAGAGTAACGCGATCAAAGAGTCTTGAAGAAACGCTGCCTCGGCCAAGTAAAGTTTCGACTAATGAAGAACAAAGGCCTAGCACCAAAGAAGGGTATAGGGAAAGGTTTATTGGTTCCGTCAGTGATATATCACCTGAAACCAGCTTTGAGGTCGGTCGCATCAGGGGACAGTGGAGAACAAGTTCTGATGGTGTTGTGAAAACATTTAGCCACCGTTATGGAAATCACGGCAAAGCTTCCCCATTAGCCGCGAACAACAACTGGGAGTCCAATACTTCCCATTCTGACGGATCGGTGGGCTCTGCTGAAGAAGCCATCCCAATAACAATGCAAAGTAAAGCAGACTACAATTCAGTTCATCAGAAAGTCAAGAAAAAGCAAAGTCCGTTCAACTTCAAAGTACTGGGAGCCGCACTAAAACCCAAAGCGTACAGAGGAAAATACGACATGCAAAGCCGCGTCGGTCAAGAATCTCCCAGTGAAGCTCGAATTGAGTTTCCTGACGAACAGCGTTATCGGCAGTTAGTTCTCGGAGAGACAAAAAGAGAAAGGAGCTCCTCAGAAACATTGTATAGATATAAAATTGAAAGTTCTGATAGTGAAGACAACCGCACTGGAACTCGCCGACGAAAAGCTGACCAAGGGAAACGGGCATCTCCAGCTTCTCTTCAAGACTTTTTGCGGAAGGGAAGTGGAGAATATTCTATCACAGAATCTGCTCAAATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z340	Partitioning defective 3 homolog OS=Rattus norvegicus OX=10116 GN=Pard3 PE=1 SV=1
Q8TEW0	Partitioning defective 3 homolog OS=Homo sapiens OX=9606 GN=PARD3 PE=1 SV=2
Q99NH2	Partitioning defective 3 homolog OS=Mus musculus OX=10090 GN=Pard3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR052213 all species →	Family	Partitioning defective 3 homolog	Interproscan
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16484 all species →	PARTITIONING DEFECTIVE 3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030010 all species →	Biological Process	establishment of cell polarity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04237	PARD3; partitioning defective protein 3	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of ENSBQFP00000016640.1 across 37 RNA-seq samples of Heliopora coerulea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

37Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Whole coral	17	0	0.00	0.00
polyp and skeleton · 31C, 3week	6	0	0.00	0.00
polyp and skeleton · 28C, 3week	6	0	0.00	0.00
polyp and skeleton · 26C, 3week	4	0	0.00	0.00
polyp and skeleton · 28C, 24hr	2	0	0.00	0.00
polyp and skeleton · 31C, 24hr	2	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
ERR6178387	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178388	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178389	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178770	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178771	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178772	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178773	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178774	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178775	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178776	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178777	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178778	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178779	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178780	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178781	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178782	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178783	Whole coral	Whole coral	not recorded	not recorded	ERP120267
SRR12578065	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12578066	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12578068	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12587799	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12587800	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12587804	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12578067	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587802	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587803	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587807	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587808	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR5949849	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587798	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12587801	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12587805	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12587806	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12578063	polyp and skeleton · 28C, 24hr	polyp and skeleton	not recorded	28C, 24hr	SRP115860
SRR5949850	polyp and skeleton · 28C, 24hr	polyp and skeleton	not recorded	28C, 24hr	SRP115860
SRR12578064	polyp and skeleton · 31C, 24hr	polyp and skeleton	not recorded	31C, 24hr	SRP115860
SRR5949848	polyp and skeleton · 31C, 24hr	polyp and skeleton	not recorded	31C, 24hr	SRP115860

Source: CnidoSite RNA-seq expression matrices (HCOER_TPM, StringTie quantification over 37 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.