Gene detail

Detailed information of ENSBQFP00000019085.1 in Heliopora coerulea

Genomic Location: JASJOG010000035.1:1017170...1026216
NR annotation: CAB3982034.1, THO complex subunit 6 homolog [Paramuricea clavata]
Species Heliopora coerulea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XJS5	THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1
Q6AY87	THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1
Q5U4D9	THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005800 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR042626 all species →	Family	THO complex subunit 6	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44411 all species →	THO COMPLEX SUBUNIT 6 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000346 all species →	Cellular Component	transcription export complex	Interproscan
GO:0000347 all species →	Cellular Component	THO complex	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13175	THOC6; THO complex subunit 6	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of ENSBQFP00000019085.1 across 37 RNA-seq samples of Heliopora coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

37Samples

26TPM > 0

6Conditions

55.4Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Whole coral	17	10	2.94	6.77
polyp and skeleton · 31C, 3week	6	6	5.52	8.48
polyp and skeleton · 28C, 3week	6	5	11.95	55.36
polyp and skeleton · 26C, 3week	4	2	2.68	5.98
polyp and skeleton · 28C, 24hr	2	2	6.68	7.85
polyp and skeleton · 31C, 24hr	2	1	3.59	7.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
ERR6178773	Whole coral	Whole coral	not recorded	not recorded	ERP120267	6.77
ERR6178778	Whole coral	Whole coral	not recorded	not recorded	ERP120267	5.56
ERR6178776	Whole coral	Whole coral	not recorded	not recorded	ERP120267	5.45
ERR6178389	Whole coral	Whole coral	not recorded	not recorded	ERP120267	5.10
ERR6178780	Whole coral	Whole coral	not recorded	not recorded	ERP120267	5.09
ERR6178774	Whole coral	Whole coral	not recorded	not recorded	ERP120267	4.94
ERR6178779	Whole coral	Whole coral	not recorded	not recorded	ERP120267	4.88
ERR6178783	Whole coral	Whole coral	not recorded	not recorded	ERP120267	4.14
ERR6178781	Whole coral	Whole coral	not recorded	not recorded	ERP120267	4.03
ERR6178770	Whole coral	Whole coral	not recorded	not recorded	ERP120267	3.94
ERR6178387	Whole coral	Whole coral	not recorded	not recorded	ERP120267	0.00
ERR6178388	Whole coral	Whole coral	not recorded	not recorded	ERP120267	0.00
ERR6178771	Whole coral	Whole coral	not recorded	not recorded	ERP120267	0.00
ERR6178772	Whole coral	Whole coral	not recorded	not recorded	ERP120267	0.00
ERR6178775	Whole coral	Whole coral	not recorded	not recorded	ERP120267	0.00
ERR6178777	Whole coral	Whole coral	not recorded	not recorded	ERP120267	0.00
ERR6178782	Whole coral	Whole coral	not recorded	not recorded	ERP120267	0.00
SRR12578066	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860	8.48
SRR12578065	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860	7.40
SRR12587804	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860	6.15
SRR12587800	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860	4.24
SRR12578068	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860	3.90
SRR12587799	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860	2.95
SRR5949849	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860	55.36
SRR12587808	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860	5.94
SRR12587802	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860	4.20
SRR12587803	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860	3.99
SRR12587807	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860	2.22
SRR12578067	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860	0.00
SRR12587798	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860	5.98
SRR12587805	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860	4.73
SRR12587801	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860	0.00
SRR12587806	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860	0.00
SRR12578063	polyp and skeleton · 28C, 24hr	polyp and skeleton	not recorded	28C, 24hr	SRP115860	7.85
SRR5949850	polyp and skeleton · 28C, 24hr	polyp and skeleton	not recorded	28C, 24hr	SRP115860	5.51
SRR12578064	polyp and skeleton · 31C, 24hr	polyp and skeleton	not recorded	31C, 24hr	SRP115860	7.17
SRR5949848	polyp and skeleton · 31C, 24hr	polyp and skeleton	not recorded	31C, 24hr	SRP115860	0.00

Source: CnidoSite RNA-seq expression matrices (HCOER_TPM, StringTie quantification over 37 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.