Detailed information of ENSBQFP00000019266.1 in Heliopora coerulea

Genomic Location: JASJOG010000035.1:1922176...1929104
NR annotation: XP_028417387.1, cornifelin homolog B-like [Dendronephthya gigantea]
Species Heliopora coerulea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PCW6Cornifelin OS=Mus musculus OX=10090 GN=Cnfn PE=1 SV=1
Q0VBW2Cornifelin OS=Bos taurus OX=9913 GN=CNFN PE=3 SV=1
Q9BYD5Cornifelin OS=Homo sapiens OX=9606 GN=CNFN PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000625 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04749
all species →		PLAC8PLAC8 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006461
all species →		FamilyPLAC8 motif-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15907
all species →		DUF614 FAMILY PROTEIN-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for ENSBQFP00000019266.1 in Heliopora coerulea.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSBQFP00000019266.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of ENSBQFP00000019266.1 across 37 RNA-seq samples of Heliopora coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

37Samples
36TPM > 0
6Conditions
576.7Max TPM
324.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Whole coral 17 17 296.45 385.83
polyp and skeleton · 31C, 3week 6 6 305.55 576.72
polyp and skeleton · 28C, 3week 6 5 318.09 484.84
polyp and skeleton · 26C, 3week 4 4 424.75 487.50
polyp and skeleton · 28C, 24hr 2 2 331.04 371.46
polyp and skeleton · 31C, 24hr 2 2 422.47 472.46

Per sample · hover a bar for the full sample record

Show the sample table (37 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
ERR6178783 Whole coral Whole coral not recorded not recorded ERP120267 385.83
ERR6178775 Whole coral Whole coral not recorded not recorded ERP120267 382.38
ERR6178774 Whole coral Whole coral not recorded not recorded ERP120267 372.23
ERR6178780 Whole coral Whole coral not recorded not recorded ERP120267 354.05
ERR6178782 Whole coral Whole coral not recorded not recorded ERP120267 338.07
ERR6178388 Whole coral Whole coral not recorded not recorded ERP120267 331.29
ERR6178777 Whole coral Whole coral not recorded not recorded ERP120267 330.76
ERR6178770 Whole coral Whole coral not recorded not recorded ERP120267 310.48
ERR6178772 Whole coral Whole coral not recorded not recorded ERP120267 309.91
ERR6178771 Whole coral Whole coral not recorded not recorded ERP120267 309.46
ERR6178778 Whole coral Whole coral not recorded not recorded ERP120267 297.90
ERR6178773 Whole coral Whole coral not recorded not recorded ERP120267 233.56
ERR6178389 Whole coral Whole coral not recorded not recorded ERP120267 228.25
ERR6178387 Whole coral Whole coral not recorded not recorded ERP120267 221.69
ERR6178776 Whole coral Whole coral not recorded not recorded ERP120267 220.94
ERR6178779 Whole coral Whole coral not recorded not recorded ERP120267 217.43
ERR6178781 Whole coral Whole coral not recorded not recorded ERP120267 195.37
SRR12587799 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 576.72
SRR12578066 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 309.10
SRR12587804 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 302.45
SRR12587800 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 293.83
SRR12578065 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 207.23
SRR12578068 polyp and skeleton · 31C, 3week polyp and skeleton not recorded 31C, 3week SRP115860 144.00
SRR12587803 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 484.84
SRR5949849 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 433.22
SRR12587808 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 395.10
SRR12587807 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 384.99
SRR12587802 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 210.40
SRR12578067 polyp and skeleton · 28C, 3week polyp and skeleton not recorded 28C, 3week SRP115860 0.00
SRR12587801 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 487.50
SRR12587798 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 430.10
SRR12587806 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 406.27
SRR12587805 polyp and skeleton · 26C, 3week polyp and skeleton not recorded 26C, 3week SRP115860 375.11
SRR5949850 polyp and skeleton · 28C, 24hr polyp and skeleton not recorded 28C, 24hr SRP115860 371.46
SRR12578063 polyp and skeleton · 28C, 24hr polyp and skeleton not recorded 28C, 24hr SRP115860 290.63
SRR12578064 polyp and skeleton · 31C, 24hr polyp and skeleton not recorded 31C, 24hr SRP115860 472.46
SRR5949848 polyp and skeleton · 31C, 24hr polyp and skeleton not recorded 31C, 24hr SRP115860 372.47

Source: CnidoSite RNA-seq expression matrices (HCOER_TPM, StringTie quantification over 37 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Heliopora coerulea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated4ENSBQFP000000456530.769675545068453
Negatively correlated50ENSBQFP00000035479-0.688110354091399

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list. Partner counts were matched on ENSBQFP00000019266, the spelling this network uses.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Heliopora coerulea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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