Genomic Location: not available for this species
NR annotation: CAB3993997.1, ribosome biogenesis BOP1 [Paramuricea clavata]
Species abbreviation HCOER · all data for this species · gene families
| CDS |
| ENSBQFT00000031747 |
| Protein |
| ENSBQFP00000028326.1 |
| UniProt accession | Description |
|---|---|
| A4IHS2 | Ribosome biogenesis protein bop1 OS=Xenopus tropicalis OX=8364 GN=bop1 PE=2 SV=1 |
| A0JMQ0 | Ribosome biogenesis protein bop1 OS=Danio rerio OX=7955 GN=bop1 PE=2 SV=1 |
| Q7ZXX9 | Ribosome biogenesis protein bop1-B OS=Xenopus laevis OX=8355 GN=bop1-b PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005052 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF08145 all species → | BOP1NT | BOP1NT (NUC169) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028598 all species → | Family | WD repeat BOP1/Erb1 | Interproscan |
| IPR012953 all species → | Domain | BOP1, N-terminal domain | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR17605 all species → | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000463 all species → | Biological Process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0030687 all species → | Cellular Component | preribosome, large subunit precursor | Interproscan |
| GO:0042254 all species → | Biological Process | ribosome biogenesis | Interproscan |
| GO:0043021 all species → | Molecular Function | ribonucleoprotein complex binding | Interproscan |
| GO:0070545 all species → | Cellular Component | PeBoW complex | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14824 | ERB1, BOP1; ribosome biogenesis protein ERB1 | - | Ribosome biogenesis | ko03009 | deepkoala |
