Gene detail

Detailed information of ENSBQFP00000034603.1 in Heliopora coerulea

Genomic Location: not available for this species
NR annotation: CAB4009855.1, Cadherin EGF LAG seven-pass G-type receptor 2, partial [Paramuricea clavata]
Species Heliopora coerulea · all data for this species · gene families

Sequence

CDS

ENSBQFT00000038785

ATGAATCCACTCAGTGCAACTGGTACAAGAAGGAATGGCGTCCACGTTTTAACAAAGCAAAATAATGTCGAGTTACCGCACATTGGCCAAACAAATGCTGGCAAAACTGCTAAGCCCACTAAGTCAACAAACGGATTGgagtttaataaatttcttgagCACGTGCTGAATGTGTCGTCTTTTGTCCCTCAGCAGAACATTGGATCCAATGTGGCTAAACCAACATCAAGAATTAAACAACACCCATACCAAAACAAAGTTTCGGGAATTACATCAAAACCCACAAGTCAACAGGAAGACAAGTCAGCTTTTGGGCATGCGAAGATATTCCAAAATCCTATGATGCCACACTCCAGTGTAACAAATCCAAAAGTCAACCAAGTAAGGGTGTCTACTACTTCAAAGCCAAATATAGAGACAACACGAGGAAGCGAAACAAACAACACGCTTGGCACTTTTAATCCATTCGAAATTGACAAAATAGAACCACTTCAACCTAAAATTGCAAGAAATttgacgacgacaacaacagcaaaagCAAACAAGCCTTCAATCTCCATTCCTAAAGGATGTTTCCCAGGCGAAATCATGTCTGAGATGACACTCGTTAATGGCCTTGGTGCAGGAAATTATACCAAAATCGGTAAAACGGAACTCATGGATACGTGCATCAGTAAATGCTGCGGAATAAAAACTTGTGAAGTTGCCATTCAGATGGACAATGTTTGCTTTGCAATCAAATGTCACTCAAAAGATACGTGCAAGATTAAGACCACCTTGGGAAAGTCGTCACATCACAAACTATGTTTCATTTCAAGGAGGAAGAAGGAAAGACAAAGTATGAATGATGTCTGTCCAGCAGACAGAGCCGTTGGACTCACCTGGAAAAAGACCACAGCTGGAAGTTTTCATGAAATTCCTTGtccaaagaaagcaaaagGCTTAGCGAAGAGAAAATGTTCCTTAGAATCGCGGTGGCTCTTACCCGACTTCAGTGATTGTGTTACTAATGATTACGAGGAACTTTACAACAGGGCCAAAAGACTTGTGTACGGAGAGGACATGAGCACTTTGCTGCAGAGTCTTGCAGTGGTTACGACCAGAACAATAGAGAATTCCTTAATATTTGGTGGAGACCTGAAAAAGACGACCGAAATTATAACATCTGTGGTTCAAGAGCAAGGAGTTAAGCCTGACACCGGCATTAGCCACCAAGACCTGAAGAATTTTCTGGTCACGTGCAGTAATCTTCTGGATGACAGCAACAAACAGGaatggaaaaatattcaaaagAAAATGAGTGGATCTGCAGATATTCTACGTTATTCTCAGATGTTTGCGCTGCTTGCGTCGTCAAAGTTTTTGGAATCCCGTCTTAATGTTACATACGTCACGAACAACATAATGCTCCAGCTAAATCACCAAGTTAAGGGATCAAAAGCAATGACAATTCCTGACTATACAAACCCAGAAACTGCCATGTGGGATGGCGAAAAAGATCACATGAGATTGCCAGATTCAATATTTAGCATAGGTGATACAAGGATAGTCAGTTTCAGTTACAAAACGTTGTCAGCGCTCTTACCGATGGCACCAAGTGAACACTTCAGGCGTTCGGAAGCAAACTCTAAAATTCTTGGAACAATTGTTCAGCCTCGCATTCAAGACAAAATTACTCCAGCAATAACCATCACATTACACCATCTAAAGGAAAACAGAATAAATCCAAGATGTGTTTTCTGGGACTTCAACCTAAATCCAACGTATGGAGGAGCTTGGTCTACCAATGGATGTTGGTTGGAGTTCAGTGACAAGAAACATTCTGTTTGCCGCTGCAACCATCTCTCAAACTTTGCCCTGCTAATGGACGTTGCTGATACTGATGTACTGCAGGTCACTTCTAAAGATCTGCACTATTCCCGTAAAATGGCTGCGATGTGGATGTGTATACCTGTGTTAGTTGTCCTAATAATCGGCAGTTTATACACCGCTTTTACATGGTCAAGAGGTCCACGAATCACCCCTCGCACATTAAATGAGAAATCAAGTCTCTTGCGGTCCTCAGTCACAACGCAAGAAATAAGATATGACTATTCTTCTTCACCCTCACGCCATCTGTACTCCGAAAGTTCTCCCAAGTTTAAAGAGCTCGAATGGCAAAACGAATTTGGGATGCAACACAAGTATGTTTGTCAGAACAAAGACAATTCTGAACTGGACTCGGGGATTGAAAGCAACGACCTTGACGACTCAAGCACTCCTGGTGACTTGTCTTTAAGTCAGGATAGCCTTTCAATCGAAGACCAATCTGCAAGTGACGAAGTAGACACAAAGGAAATGAAAGCAACAAATATTGATGACTCGAGACAAATGGCTTTGATTAGTACGCACCAGAGatcaaatgaaaataaacttGTATGGAATCATTTAAGCCATCTGGAAATTGAAAGAAGGGTTTTTGCAACTAATATTCGCAGATGCACAGGAAACAACGATCTCTCAACAAATAAGCATGTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCU4	Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens OX=9606 GN=CELSR2 PE=1 SV=1
Q9QYP2	Cadherin EGF LAG seven-pass G-type receptor 2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Celsr2 PE=1 SV=1
Q9R0M0	Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus OX=10090 GN=Celsr2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003363 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16489 all species →	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF02793 all species →	HRM	Hormone receptor domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051587 all species →	Family	Adhesion G-protein coupled receptor	Interproscan
IPR001879 all species →	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR032471 all species →	Domain	GAIN domain, N-terminal	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR036445 all species →	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45813 all species →	EF-HAND DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSBQFP00000034603.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of ENSBQFP00000034603.1 across 37 RNA-seq samples of Heliopora coerulea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

37Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Whole coral	17	0	0.00	0.00
polyp and skeleton · 31C, 3week	6	0	0.00	0.00
polyp and skeleton · 28C, 3week	6	0	0.00	0.00
polyp and skeleton · 26C, 3week	4	0	0.00	0.00
polyp and skeleton · 28C, 24hr	2	0	0.00	0.00
polyp and skeleton · 31C, 24hr	2	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
ERR6178387	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178388	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178389	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178770	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178771	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178772	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178773	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178774	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178775	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178776	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178777	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178778	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178779	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178780	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178781	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178782	Whole coral	Whole coral	not recorded	not recorded	ERP120267
ERR6178783	Whole coral	Whole coral	not recorded	not recorded	ERP120267
SRR12578065	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12578066	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12578068	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12587799	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12587800	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12587804	polyp and skeleton · 31C, 3week	polyp and skeleton	not recorded	31C, 3week	SRP115860
SRR12578067	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587802	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587803	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587807	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587808	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR5949849	polyp and skeleton · 28C, 3week	polyp and skeleton	not recorded	28C, 3week	SRP115860
SRR12587798	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12587801	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12587805	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12587806	polyp and skeleton · 26C, 3week	polyp and skeleton	not recorded	26C, 3week	SRP115860
SRR12578063	polyp and skeleton · 28C, 24hr	polyp and skeleton	not recorded	28C, 24hr	SRP115860
SRR5949850	polyp and skeleton · 28C, 24hr	polyp and skeleton	not recorded	28C, 24hr	SRP115860
SRR12578064	polyp and skeleton · 31C, 24hr	polyp and skeleton	not recorded	31C, 24hr	SRP115860
SRR5949848	polyp and skeleton · 31C, 24hr	polyp and skeleton	not recorded	31C, 24hr	SRP115860

Source: CnidoSite RNA-seq expression matrices (HCOER_TPM, StringTie quantification over 37 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.