Gene detail

Detailed information of ENSBQFP00000039364.1 in Heliopora coerulea

Genomic Location: :...
NR annotation: PFX23612.1, Transposon Ty3-G Gag-Pol polyprotein [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSBQFT00000044265

ATGTcaggagaaaacaaaacatgttatagATGTGGCCACACAGGACATTTTGGAAGAGATCCTGAATGCCCTGCGAAAGGAAAAACCTGCAAGACATGTGGTGGCGCTGATCATTTTGCTTCGCAATGCAGAACCAAGTCAGTGGCTCAGCCAGTCAGGCACACTCCGTTCAGCCTCTGTGACAAGGTGAAGAAAAAGGTCGAGGAACTTGTAAGCATGGATATTATTCAGGCAGTGAATGGCCCAGCACCACGGGTTAGTCCAGTGGTGCTTTGTGTAGACATGCGAAGAGCCAATGAAGCAATAATCAGAGAACGCTATCCCATACCTACTGTGGATGAAGTACTCCAAAGCCTCAACCAAAGCACAGTGTTTAGCAAGCTTGATTTAAAGTGGGGTTACCATCAGCTAGAACTCCATCCAGATTCCTGTAGCATTACTACCTTCATCACTCATTGTGGGTTGTTTCAATATAAGCGCCTGATGTTTGGAATAAGCTCAGTCCCAGAAGTGTATCAGCATGTTTTGCAGCAAGCACTCAGTGACTGTCCTTTGGCAGTGCTCAAAGTATCAGCAGAAGATGAAGAATTCAGTGAGCTGCATCACTGTATAAAGAGCAGAACTTGGAAGGATGGCCAGCTCAAGCAGTATGTATCTGTAGCCAGCAAACTGTGTGATTGGAAGATCACGCCCTTATGGCCCCAAGCAAATGGCAAGGTGGAACGGCAGGACCGATCTCTTTTAAAAAGGATGTGGGTCGCACAAGCCAAGGGCAAACAGTGGAAGGAAGAAGTTCACAAATACTTAATAGCATACAGATCGACTCCTCACACCACCACTGGAGTGAGTCCAGCTGAACTtctCGACAGAGTGCTACTAAAACAAGAGAAGCAAAACAAGTTATCGACACCATTTGCACCAGAACCATATGATGTTGTTAGCAGGAATGGCAGCAGCATTATTATCAAGTCTCCTGAGGGTGTTCAGTTAAAAAGGAATACTGTGCACATAAAAAAATATGAGGAACTGCTACCCATGCCAAGTCAAACTGTTCTTCTGCCTGTTGAAAAGGATGTACAAGCAGAGATTCCTACTCCACCGACAAATCTTGAGATGGATTGTGGAAAAACTAGAACTGCTATATCTACAAGACCAAACCCTTCCTCCGACGAGTTCCCTGGAAAGCCTACCATTATCCACATCCGAAAGAAACTTCAGCTAAAGAAACCTTTGGATTTAACCAAAAACCCACCACCAGTGAAAGAACTAAGCCAATTTGAAGACAAGATGCTTGCACTCattcaaaacatcaattttaaaactGAATGCAACAACTTCCAGAACAAGCTAGCACAGAATGCAAAGAAAATACGATCTGACAACAAACTACTCGTTGCTGCTGACAAGACCACAAACTTCTACCGACTGGATGCTGCCTCATACAAACAATTACTCAACACCACAATTACAAAATCCTACAAGAAAGCTCCCAACAATGCAAAAAACCACAAACCCAACTTCAACAACAAGCCCACGTGCAGATTAATAAACCCATCAAAATCAGAAATCGGAATTATTAGCAAACAAATCCTCCGACACATCAACTCCAAAATCGTCAATTCTACAAAACTAAACCAATGGAAAAATACTGACTCGGTTATTCTCTGGTTCAATCAGCTGACAGATAAATCAGACCACTCATTTATCAGCTTTGACATAATTGACTTCTACCCCTCGatatctgaaaaattacttCTAGATGCCCTGACTTTCGTATTAAACCATGACGAAATAACCGAAGACAAGAAAAACATTATTATCCAGGCAAAGAAATCCATTCTCTTCGATGAAAACACAGCTTGGTGCAAAAAATCATCGACCTCGCTTTTTGACGTGACGATGGGTTCGTTTGACAGAGCAGATACATGTGAAATTGTCAGCTCCTTCTTACTGTCAAAACTAACACTGCTATATGACAACAACATCAGACTTTACAGAGGCGATGGACTTGCCGCCTTAAACAAATCaccaaaagaaattgaaaatatcaagaagCACATCctgcagagtgctcaatatggaCCAAGGGGCCATAGAGTGATatctaactgcagacggaaccgtttcggcctatcgggcctcatcagtgcagtgctgacgagcaggatggagaagcctacattatataggcaactcaaatgtgccccacatgtggtacatctaagccatgccagagcgctctaa

Transcript

Protein

Uniprot

Uniprot term	Description
P31843	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
P27502	Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) OX=10655 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan