Genomic Location: JASJOG010000179.1:513274...534665
NR annotation: XP_028396403.1, carboxypeptidase D-like [Dendronephthya gigantea]
Species Heliopora coerulea · all data for this species · gene families
| CDS |
| ENSBQFT00000044692 |
| Protein |
| ENSBQFP00000039743.1 |
| UniProt accession | Description |
|---|---|
| Q9JHW1 | Carboxypeptidase D OS=Rattus norvegicus OX=10116 GN=Cpd PE=1 SV=2 |
| O89001 | Carboxypeptidase D OS=Mus musculus OX=10090 GN=Cpd PE=1 SV=2 |
| O75976 | Carboxypeptidase D OS=Homo sapiens OX=9606 GN=CPD PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007356 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00246 all species → | Peptidase_M14 | Zinc carboxypeptidase | Domain | Interproscan |
| PF13620 all species → | CarboxypepD_reg | Carboxypeptidase regulatory-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000834 all species → | Domain | Peptidase M14, carboxypeptidase A | Interproscan |
| IPR050753 all species → | Family | Peptidase M14 domain-containing protein | Interproscan |
| IPR008969 all species → | Homologous_superfamily | Carboxypeptidase-like, regulatory domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11532 all species → | PROTEASE M14 CARBOXYPEPTIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004181 all species → | Molecular Function | metallocarboxypeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0006518 all species → | Biological Process | peptide metabolic process | Interproscan |
| GO:0016485 all species → | Biological Process | protein processing | Interproscan |
ENSBQFP00000039743.Transcript abundance of ENSBQFP00000039743 across 37 RNA-seq samples of Heliopora coerulea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Whole coral | 17 | 17 | 44.06 | 63.98 | |
| polyp and skeleton · 31C, 3week | 6 | 6 | 57.53 | 78.15 | |
| polyp and skeleton · 28C, 3week | 6 | 5 | 65.53 | 163.95 | |
| polyp and skeleton · 26C, 3week | 4 | 3 | 33.97 | 57.54 | |
| polyp and skeleton · 28C, 24hr | 2 | 2 | 49.99 | 58.11 | |
| polyp and skeleton · 31C, 24hr | 2 | 1 | 41.29 | 82.58 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| ERR6178775 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 63.98 |
| ERR6178781 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 51.56 |
| ERR6178778 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 49.87 |
| ERR6178771 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 49.07 |
| ERR6178777 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 48.69 |
| ERR6178388 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 47.60 |
| ERR6178772 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 45.96 |
| ERR6178774 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 44.63 |
| ERR6178773 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 44.41 |
| ERR6178776 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 43.63 |
| ERR6178783 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 41.15 |
| ERR6178770 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 40.96 |
| ERR6178389 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 40.22 |
| ERR6178780 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 36.29 |
| ERR6178387 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 35.32 |
| ERR6178779 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 32.95 |
| ERR6178782 | Whole coral | Whole coral | not recorded | not recorded | ERP120267 | 32.70 |
| SRR12578068 | polyp and skeleton · 31C, 3week | polyp and skeleton | not recorded | 31C, 3week | SRP115860 | 78.15 |
| SRR12578065 | polyp and skeleton · 31C, 3week | polyp and skeleton | not recorded | 31C, 3week | SRP115860 | 75.02 |
| SRR12587804 | polyp and skeleton · 31C, 3week | polyp and skeleton | not recorded | 31C, 3week | SRP115860 | 73.80 |
| SRR12578066 | polyp and skeleton · 31C, 3week | polyp and skeleton | not recorded | 31C, 3week | SRP115860 | 44.45 |
| SRR12587799 | polyp and skeleton · 31C, 3week | polyp and skeleton | not recorded | 31C, 3week | SRP115860 | 41.91 |
| SRR12587800 | polyp and skeleton · 31C, 3week | polyp and skeleton | not recorded | 31C, 3week | SRP115860 | 31.85 |
| SRR5949849 | polyp and skeleton · 28C, 3week | polyp and skeleton | not recorded | 28C, 3week | SRP115860 | 163.95 |
| SRR12587802 | polyp and skeleton · 28C, 3week | polyp and skeleton | not recorded | 28C, 3week | SRP115860 | 76.99 |
| SRR12587803 | polyp and skeleton · 28C, 3week | polyp and skeleton | not recorded | 28C, 3week | SRP115860 | 64.93 |
| SRR12587808 | polyp and skeleton · 28C, 3week | polyp and skeleton | not recorded | 28C, 3week | SRP115860 | 51.40 |
| SRR12587807 | polyp and skeleton · 28C, 3week | polyp and skeleton | not recorded | 28C, 3week | SRP115860 | 35.94 |
| SRR12578067 | polyp and skeleton · 28C, 3week | polyp and skeleton | not recorded | 28C, 3week | SRP115860 | 0.00 |
| SRR12587806 | polyp and skeleton · 26C, 3week | polyp and skeleton | not recorded | 26C, 3week | SRP115860 | 57.54 |
| SRR12587805 | polyp and skeleton · 26C, 3week | polyp and skeleton | not recorded | 26C, 3week | SRP115860 | 39.31 |
| SRR12587798 | polyp and skeleton · 26C, 3week | polyp and skeleton | not recorded | 26C, 3week | SRP115860 | 39.03 |
| SRR12587801 | polyp and skeleton · 26C, 3week | polyp and skeleton | not recorded | 26C, 3week | SRP115860 | 0.00 |
| SRR5949850 | polyp and skeleton · 28C, 24hr | polyp and skeleton | not recorded | 28C, 24hr | SRP115860 | 58.11 |
| SRR12578063 | polyp and skeleton · 28C, 24hr | polyp and skeleton | not recorded | 28C, 24hr | SRP115860 | 41.87 |
| SRR12578064 | polyp and skeleton · 31C, 24hr | polyp and skeleton | not recorded | 31C, 24hr | SRP115860 | 82.58 |
| SRR5949848 | polyp and skeleton · 31C, 24hr | polyp and skeleton | not recorded | 31C, 24hr | SRP115860 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HCOER_TPM,
StringTie quantification over 37 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Heliopora coerulea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 31 | ENSBQFP00000012237 | 0.916175409031059 |
| Negatively correlated | 13 | ENSBQFP00000029341 | -0.783139857321941 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Heliopora coerulea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
