Gene detail

Detailed information of ENSCIQP00000001685.1 in Millepora alcicornis

Genomic Location: chr1:273556589...273608835
NR annotation: XP_002157282.1, dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSCIQT00000002010

AGCGTAGCGGCCGTCTACTGTGACTTGGGATGGTGAACGTTGGAAAGGTTGAATAAGTGACAGGTATCCAGCAATATCCCCAGAATTAGGTTGAAAGAGATGTATTATCAACAATTTGCTACGACTCCAGTcataacaatattgtttttgtttattctgGGTACAGTTTGCGGTgaattaattattaatgaagtagacAGAAACATTGATCTAACGTCTCAAACAGCAaaatatacagataaaataaCAGTCCAAAATATTggacaaaatccagaaaaagtttttctgcttGCCATAGAGGAAGTTTTAGGAGCACACCTAGCATATTTGGAAATTACCGATGTTCGAGACGAAGAGACCAAACTGGAATTTGCTTCAACCACAGTTGATGGACAAAGTGGAAAATTCTACAAGGTTACCTTTCCATCGCCAGTGGGTGCGGCGAAGACAGTCTCTGTCAACGTAGAAGTAGTATTCACGCATGTTCTAGAACCATTTCCTGCTAGAATCGGGCAATCAGAGAAACAATTAGTATTATACAAAgcaaacacacttttttattcaCCGTATGAAGTCAAAGACCAGACAACAGTAGTCAAATTAGCATCGGCAACCATAGAATCTTATTCACGTTTAAAACCATCAAGAAGTAGCGACAACACTATCACTTATGGACCATATAAAGACTCGAAACCTTACCGCtttcatgaaatgaaaattcattttgagAACAATTCGCCATTTTTGGTGGTAAGTGAAATGACTCGATGGATTGAAATATCACACTGGGGCAACGTAGCTGTTGAAGAAACTTATCACATGGTTCATGAAGGAGCTCAACTGAAGGGCCATTTTTCACGTTACGACTACCAACGAACACCGACTTATGCtgcagtaaaatcttttaaaacggTCCTGCCTGCTGCCGCCCGTGATGTTTATTACCGTGATGAAATTGGTAACATTTCAACCAGTAACATGTTGATTAATGACGACAGTGTTGAAGTCGAACTTAGACCCAGGTTTCCATTATTTGGTGGATGGCAAACCAGATACATGTTGGGGTATAACACGCCTGCTTATCAATACCTGTATAACAAAGGTGATAAATACATTTTGAAGATGAGGTTAATTGATCATGTTTTTGATGACTTTGTAATTGACAAGCTAACCGTGAAAATTGTGTTGCCAGAGGGAAGTCGAAATATTCGTATTGCCACCCCTTACCATATCGAAGAAGGTAAACGTGAAGTTCATAAGACCTATCTGGATACTGCAGGAAGAACAGTCGTGGTGTTGAAGAAAAACAACCTTGTGGAAAGTCATATTCAAGATTTTGAGGTGCGCTACTCGTTCAAGAAGATGCAGTTACTGCAAGAGCCATTGTTATGCGTTGCAGCCTTCTACATTCTGTTCCTATCAGTCATCATACTTGTTAGATTAGATTTCTCAATCACAAAGGATGTCGCCAAAGAATCCCGCATGAAAGTTGCCAGCCTGGTCGAGGATCTTTTGAGTTTATGCGGAAGACGTGCTACTCTTTACAATTTGTACGATGTTGCTATCGATAAATTAAAGCAGAGCAAAGACCAGAGTGCATTTGCTGCgacaaacaaaaaactgaatcAAGATTATAATAATGTGACACAGTCAGTTAATGAGGTATGCGCGCAGTTGATCAAAGAAGACCCAGACACAGGAGATAAGgTTACCGAGCTCCAGAAAAAAGAGCACGATAGAAAAGTTTTGGAAGACCAATTAGTGGCATTGGCCACGAAAGTCATTACAAATAAGATGAGTCGACAGCAGTATATCGAGAATGAGCAAACTGCAGTAGCGAAACGTGATAAAATTGGTGATGACATCGATAGTCTATTAGCTACAATATGAGAcaatttattttagaataaatgattttaggaattttttataGACCCAGGTTCTTTTTTTTGAGCAATTCATTTCTAAGTCAAATACACAAGTCAATAATTAGAACTTATGCCATTTTACGATCTTAAAATTAACAATTGAGGAAATAAATTTTGTATGCGGAGGTTTGTTTTAGAATAAATTGGTGGTGAATACAATATTGTCATTGTTGTTTTCTTTCTGCTTTAAAATTATTGTTGTTGAGCTGCTATCGTGCCATGAAGATCAGAGAGGTTGGAAAAGTTTTACCGCAGATCCGACTGTAAAGAAAAAGACCATCAAATTTCAAAGATCAGCTTTTTTTTCGGCCAAGAAGCATTAGCTTTTCCAGCGTATTGTCTTCAgatcaaaacttttatttattacagtcaaattgataGAATTTCAACCGAGTAAAACCTTTCTACTGCTTTAAATGGAAATAACAAAATGGACAGGATATGGAAATAGTTATCGCATCACTTACATTTCTCTAGCTGTGTAGAAGTCTTGCTTGCACGAGCTAATTCACCTTTTTGTTTACAAGTGGAAAGCTCGCAGACATGTTAAAACGTATTGCCATTTGATAACTTTTAGTGATGGCTTTGGCTTGAAACTAGGTGAACATATTAAAGGGATAGATTAGTGATGGTTTTGGCATGACGCTCGGTGAACATATTAAAGGAACAGACCTGAAAACCTGATACTTTGCGATACCATTAGttagaattagttaaagaaatgtGGACATTTTAACATTGATATGAGATCTGCTTTTGTAGATATGCACTAATTGTACCATTTTCGATgacaagttgaaaataaatgCCTAACGTGATTCTTTCAACTTTTGAGTTGGTTTGGGATATTCCGGACCTAATTTGAAATGGGAGAGGAGTAGAGAATGCCCGTCCAACCCGTTCTTGTTTTTTTCTACTGAAGGTAATCATGATCATACACTATCACTTTATAGTCCAACTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GMB0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa OX=9823 GN=RPN1 PE=1 SV=1
E2RQ08	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Canis lupus familiaris OX=9615 GN=RPN1 PE=1 SV=1
Q5RFB6	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii OX=9601 GN=RPN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006390 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04597 all species →	Ribophorin_I	Ribophorin I	Family	Interproscan
PF14966 all species →	DNA_repr_REX1B	DNA repair REX1-B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007676 all species →	Family	Ribophorin I	Interproscan
IPR039491 all species →	Family	Required for excision 1-B domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21049 all species →	RIBOPHORIN I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0018279 all species →	Biological Process	protein N-linked glycosylation via asparagine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12666	RPN1, OST1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 1 (ribophorin I)	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.