Gene detail

Detailed information of ENSCIQP00000002127.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_002157707.2, GDP-mannose 4,6 dehydratase [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000002546

AAGGAATTGTCTTACATTCAACATGGCAGCTGCATCAACAGATAATAGAAAAGTGGCGTTGATTACAGGTGTCACAGGGCAGGATGGCTCATACTTGGCTGAATTTCTCCTAGAGAAAGGATATGAAGTTCACGGCATTATTAGGCGATCTAGTTCGTTCAATACAGGGAGAATACAACATTTGTATAAAGACAGAACCGCGCATTTAGAAGGAAATTTGCATCTACATTATGGCGACACAACAGATTCTTCATGCTTGTTACACGTAGTCTCAAAGACACAACCCACAGAAATCTACAATCTAGCAGCTCAAAGTCATGTTAAGGTTTCGTTCGATCTCGCAGAATACACAGCAGATGTGGATGCTATGGGAACACTGAGACTTTTGGAAGCGATAAAGATATGCGGACTTAtgaataaagttaaattttatcAGGCTTCGACAAGTGAGCTTTATGGAAAAGTTCATGAAATTCCTCAAACTGAAACCACGCCGTTTCATCCCCGCTCTCCATATGGAGTTGCCAAGCTTTACGCTTATTGGATAGTAACGAACTATCGTGAAGCTTATGGTTTATATGGCTGTAACGGCATACTTTTCAACCACGAAAGTCCACGAAGAGGTGAAACGTTTGTGACGCGTAAAATCACACGTGCTGTAGCTAAGATTCACTTGGGTCTCCAACAAGAGttagTTTTAGGAAACATCGATTCCGTGCGTGATTGGGGACATGCAATCGATTATGTGGAGGCCATGTGGCTCATTTTACAACAAGAAAAACCGGATGATTACGTTGTAGCGACTGGAGAGACACATACCGTCAGAGAATTCGTTGAAAAATCATTCGCTCTCGTTAATGTTAAAATCAGGTGGGAAGGCAGCGGAGAGAACGAGATAGGGTATGATGATGCCACCAATGTCGTGCGAGTTCGTGTGAGTTCGAAATATTACAGACCTGCTGAAGTAGACTATCTCCACGGTAACCCAGCCAAAGCAGAAAAACAGTTGGGTTGGAAAAGGAAAGTATCATTTGACgACCTAGTCAAAGAAATGGTCGAGTCAGATATCGCTTTGATGAAGAAAAACCCGGAAGCTTAAACAAGTGGCTTCTTCAATGAATACTCACACAAGGGATTGTATTTCAAAATAGTATTAAGTGGCAGTGGTTCCTACATTATTAGGTTCtcatattcaataaaaatgaactttcCTTTGCTAATCGttaggattttaacaaaattgttttgaaatcatCCACATTTAATAACAACACTGAAGACAGCAGAAAATTTGTGaaactacaatcatggtcatatcttgagacttttcggtgtttgatcaaattttcctttcaccacaactgaaacgaagcatgataattagtaataaacatggtatgcacgagttgcctgacgagttgccgAACTTCTTAAGACTTAGAaacttaggaaatcaggaaatatcaggaaaatctcaaaacgttaTAGAATTCTAGCCTAGTGTTCAGTTatcctccaaaaaaaatttttcaatactagtaaaaaactcgtgaaaaatagaaattgcaatTTTCctgtagtgccctatttcacatgaaaactagagtttgtgtcaaatattttgtccatgattgtaggttAATGCTGCAAGTTAAAAAGATGAAAGCGACATCGATAACTGTTCCTACAGTGTCTCCATTCGTATTGGGTAACCCATTTTGTGCCAGTAGTTTCTTTCATCCCCATACTTTCCATCAATATTGGAAAGCACTGAAATAGAGGGGAATATTGGTACGAAagtgattaacccatttctggccagtaTTCCTATTTATAGCCCTATTATattcctattttctatttttttgagaAACGGCTCAGCAAAATCACATATTTTCAAAGGTttatattgaacattttcaaatttttgttattcagaCCATGTATGCGGTTTTAGGTTTTCATTCCTATGGAAAGTTACACTCATAGAacttgtgcctaattgtagggtgTGGGGgagggtcgaataaaatgca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K0C9	GDP-mannose 4,6 dehydratase OS=Mus musculus OX=10090 GN=Gmds PE=1 SV=1
Q8K3X3	GDP-mannose 4,6 dehydratase OS=Cricetulus griseus OX=10029 GN=GMDS PE=2 SV=1
O60547	GDP-mannose 4,6 dehydratase OS=Homo sapiens OX=9606 GN=GMDS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003533 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16363 all species →	GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006368 all species →	Family	GDP-mannose 4,6-dehydratase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR016040 all species →	Domain	NAD(P)-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43715 all species →	GDP-MANNOSE 4,6-DEHYDRATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008446 all species →	Molecular Function	GDP-mannose 4,6-dehydratase activity	Interproscan
GO:0019673 all species →	Biological Process	GDP-mannose metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01711	gmd, GMDS; GDPmannose 4,6-dehydratase	EC:4.2.1.47	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.