Genomic Location: chr1:176083339...176085000
NR annotation: AER54544.1, NADH dehydrogenase subunit 2 [Millepora sp. EK-2011]
Species Millepora alcicornis · all data for this species · gene families
| CDS |
| ENSCIQT00000002718 |
| Transcript |
| ENSCIQT00000002718 |
| Protein |
| ENSCIQP00000002273.1 |
| UniProt accession | Description |
|---|---|
| O79407 | Cytochrome c oxidase subunit 3 OS=Scyliorhinus canicula OX=7830 GN=MT-CO3 PE=3 SV=1 |
| Q95914 | Cytochrome c oxidase subunit 3 OS=Polypterus ornatipinnis OX=49895 GN=mt-co3 PE=3 SV=1 |
| O47491 | Cytochrome c oxidase subunit 3 OS=Metridium senile OX=6116 GN=COIII PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014003 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00361 all species → | Proton_antipo_M | Proton-conducting membrane transporter | Family | Interproscan |
| PF00510 all species → | COX3 | Cytochrome c oxidase subunit III | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR024791 all species → | Family | Cytochrome c oxidase subunit III | Interproscan |
| IPR000298 all species → | Domain | Cytochrome c oxidase subunit III-like | Interproscan |
| IPR001750 all species → | Domain | NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit | Interproscan |
| IPR035973 all species → | Homologous_superfamily | Cytochrome c oxidase subunit III-like superfamily | Interproscan |
| IPR033945 all species → | Domain | Cytochrome c oxidase subunit III domain | Interproscan |
| IPR013833 all species → | Homologous_superfamily | Cytochrome c oxidase, subunit III, 4-helical bundle | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11403 all species → | CYTOCHROME C OXIDASE SUBUNIT III | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004129 all species → | Molecular Function | cytochrome-c oxidase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006123 all species → | Biological Process | mitochondrial electron transport, cytochrome c to oxygen | Interproscan |
| GO:0009055 all species → | Molecular Function | electron transfer activity | Interproscan |
| GO:0009060 all species → | Biological Process | aerobic respiration | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0019646 all species → | Biological Process | aerobic electron transport chain | Interproscan |
| GO:0022904 all species → | Biological Process | respiratory electron transport chain | Interproscan |
ENSCIQP00000002273.1.Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |