Detailed information of ENSCIQP00000002273.1 in Millepora alcicornis

Genomic Location: chr1:176083339...176085000
NR annotation: AER54544.1, NADH dehydrogenase subunit 2 [Millepora sp. EK-2011]
Species Millepora alcicornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O79407Cytochrome c oxidase subunit 3 OS=Scyliorhinus canicula OX=7830 GN=MT-CO3 PE=3 SV=1
Q95914Cytochrome c oxidase subunit 3 OS=Polypterus ornatipinnis OX=49895 GN=mt-co3 PE=3 SV=1
O47491Cytochrome c oxidase subunit 3 OS=Metridium senile OX=6116 GN=COIII PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0014003 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00361
all species →
Proton_antipo_MProton-conducting membrane transporterFamilyInterproscan
PF00510
all species →
COX3Cytochrome c oxidase subunit IIIFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024791
all species →
FamilyCytochrome c oxidase subunit IIIInterproscan
IPR000298
all species →
DomainCytochrome c oxidase subunit III-likeInterproscan
IPR001750
all species →
DomainNADH:quinone oxidoreductase/Mrp antiporter, membrane subunitInterproscan
IPR035973
all species →
Homologous_superfamilyCytochrome c oxidase subunit III-like superfamilyInterproscan
IPR033945
all species →
DomainCytochrome c oxidase subunit III domainInterproscan
IPR013833
all species →
Homologous_superfamilyCytochrome c oxidase, subunit III, 4-helical bundleInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11403
all species →
CYTOCHROME C OXIDASE SUBUNIT IIIInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004129
all species →
Molecular Functioncytochrome-c oxidase activityInterproscan
GO:0005739
all species →
Cellular ComponentmitochondrionInterproscan
GO:0006123
all species →
Biological Processmitochondrial electron transport, cytochrome c to oxygenInterproscan
GO:0009055
all species →
Molecular Functionelectron transfer activityInterproscan
GO:0009060
all species →
Biological Processaerobic respirationInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0019646
all species →
Biological Processaerobic electron transport chainInterproscan
GO:0022904
all species →
Biological Processrespiratory electron transport chainInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSCIQP00000002273.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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