Detailed information of ENSCIQP00000002527.1 in Millepora alcicornis

Genomic Location: chr11:164403172...164472971
NR annotation: XP_002156611.1, signal recognition particle 19 kDa protein [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P49963Signal recognition particle 19 kDa protein OS=Drosophila melanogaster OX=7227 GN=Srp19 PE=2 SV=2
Q9D7A6Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=1 SV=1
P09132Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008224 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01922
all species →		SRP19SRP19 proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036521
all species →		Homologous_superfamilySignal recognition particle, subunit SRP19-like superfamilyInterproscan
IPR002778
all species →		FamilySignal recognition particle, SRP19 subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17453
all species →		SIGNAL RECOGNITION PARTICLE 19 KD PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006614
all species →		Biological ProcessSRP-dependent cotranslational protein targeting to membraneInterproscan
GO:0008312
all species →		Molecular Function7S RNA bindingInterproscan
GO:0048500
all species →		Cellular Componentsignal recognition particleInterproscan
GO:0005786
all species →		Cellular Componentsignal recognition particle, endoplasmic reticulum targetingInterproscan
GO:0006617
all species →		Biological ProcessSRP-dependent cotranslational protein targeting to membrane, signal sequence recognitionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03105SRP19; signal recognition particle subunit SRP19-Secretion systemko02044deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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