Genomic Location: chr1:87374831...87377672
NR annotation: XP_012553640.1, guanylate cyclase soluble subunit beta-1 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families
| CDS |
| ENSCIQT00000004237 |
| Transcript |
| ENSCIQT00000004237 |
| Protein |
| ENSCIQP00000003641.1 |
| UniProt accession | Description |
|---|---|
| O54865 | Guanylate cyclase soluble subunit beta-1 OS=Mus musculus OX=10090 GN=Gucy1b1 PE=1 SV=1 |
| Q4ZHR9 | Guanylate cyclase soluble subunit beta-1 OS=Canis lupus familiaris OX=9615 GN=GUCY1B1 PE=2 SV=1 |
| Q02153 | Guanylate cyclase soluble subunit beta-1 OS=Homo sapiens OX=9606 GN=GUCY1B1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001299 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07700 all species → | HNOB | Haem-NO-binding | Domain | Interproscan |
| PF00211 all species → | Guanylate_cyc | Adenylate and Guanylate cyclase catalytic domain | Domain | Interproscan |
| PF07701 all species → | HNOBA | Heme NO binding associated | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011644 all species → | Domain | Heme NO-binding | Interproscan |
| IPR001054 all species → | Domain | Adenylyl cyclase class-3/4/guanylyl cyclase | Interproscan |
| IPR038158 all species → | Homologous_superfamily | H-NOX domain superfamily | Interproscan |
| IPR029787 all species → | Homologous_superfamily | Nucleotide cyclase | Interproscan |
| IPR018297 all species → | Conserved_site | Adenylyl cyclase class-4/guanylyl cyclase, conserved site | Interproscan |
| IPR024096 all species → | Homologous_superfamily | NO signalling/Golgi transport ligand-binding domain superfamily | Interproscan |
| IPR042463 all species → | Homologous_superfamily | Haem NO binding associated domain superfamily | Interproscan |
| IPR011645 all species → | Domain | Haem NO binding associated | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45655 all species → | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004383 all species → | Molecular Function | guanylate cyclase activity | Interproscan |
| GO:0006182 all species → | Biological Process | cGMP biosynthetic process | Interproscan |
| GO:0008074 all species → | Cellular Component | guanylate cyclase complex, soluble | Interproscan |
| GO:0019934 all species → | Biological Process | cGMP-mediated signaling | Interproscan |
| GO:0070482 all species → | Biological Process | response to oxygen levels | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0009190 all species → | Biological Process | cyclic nucleotide biosynthetic process | Interproscan |
| GO:0035556 all species → | Biological Process | intracellular signal transduction | Interproscan |
| GO:0016849 all species → | Molecular Function | phosphorus-oxygen lyase activity | Interproscan |
ENSCIQP00000003641.1.Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
