Gene detail

Detailed information of ENSCIQP00000004257.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047145020.1, ATP-dependent RNA helicase DDX54 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000004871

agaCAGACAGTATTATTCTCTGCAACTCTACCAAAGGTCCTTGTGGATTTTGCATCTGCAGGTCTGAATAATCCAGAACTTGTTAGGCTAGACGTGGACACAAAGATTAGTAATAACTTGAAGatGTCGTTTTTCATGATGCGTCCTGATGACAAAGTTGctTGCTTACTGTACCTGATTAAGAAAGTCATAGCCAGAAAACAAcaagttgttgtttttgttgcaaCAAAACATCACGTGAATTACCTACAACAGTTATCAGAAGATGCTGGTATTATGTCGACATATATCTATTCTTCATTGGACCAAACAGCTCGAAAAATCAATATagccaaatttcagaaaaaaattaatcatgtgATGTTTGTTACTGATATTGCGgCTCGAGGTATTGATATTCCTATGTTGGACAATGTCATCAATTATGATTTCCCCTCACAaccaaaaatatttgtacatagAGTTGgtCGTGTTGCAAGGGCAGGTCATTCAGGAACAGCCTATTCATTTCTATGTAAAGACGAGATGTCGTTTTTTTTCGACTTACATTTGTTCTTGGGACGAGCAGTGAAATTTGCAGGAGCAGATTCGAAggaagAAGAAGATGGTTTGATAGGGACAGTGCCTCAGGATATTCTCTCCAATGAAACCGATTTCGTGCAGAATGCAGCAGCAGTTAATTTTAATCTAACTTCAATGCATAAAGTTATGATGAATGGGTACAAGCAATATGTTCGATCAAGGGAAACCCCCTCAGCTGAATCAATCAAACGTTCAAAATGTGTCAACCTTACTTCAATAGAGCCTCATCCAGTATTTaAGAATGATATGGCAACAGACGAATTGTCGAAACTGTTATCAGATCTCCAGAAATTCAAGCCAAACTTGACAGTATTTGAAGCCATGAACACCAAAAAATCCAGGGTTGCAGAAAATGTAATGAAAACTAAAAGaattGAGCACTGTTCAATGATACAGCAAAATAAACTGAAGTTTGCTGGTGAGCAGAATCATGGGAAGAGGGAAGCAAATGGAAAAGTTAGCACAGTTGTTGATGAAGAATACATTGCAGATGCATTtgcattgaagaaaaataaaggttACAAAGATGAAAATTACATCCCTCACCGTGCGTCTGACCATTATGCAGAACAAGGGTTTCATGTAAAATCATTTGAGAAAGAAGCACAAAATGCCACACTGGATTTAATGTCAGATGATAAAGATATTGTGCGTAACAATTCAGCAAAGCAAAAATGGGATCGTAAACGTAAAAAATTTGTATCTACAGAAGGCAGCCGaccaaagaaaatcaaaacagaaaGTGGAATTTACATCTCTGCATCTTACAAATCGAATTCATATAAAGATTGGATGAAAAGAAACACTAACATAAGAAACACCACTGAAAAAGAGAGAGAAAATGACAgtgtaaagaagtttttgtttacaaaaaaaaatagagGAAAACATCCAAAAGtgggaaatacttttaaaaataagaaaagagccAAGGGAGTGCTGAAAACTAAAGAAGAGATGGTAAATAATCGAGTCAGTGCatgtcaaaaaagattttttcagaaaagcaggAGTGGTAgtagaagaaaatgaaacataCAAAAGAGGaaagtctaaaaaagaaaagtgactTGCAGCTGCAATATCAGTGTTGTATATAAAGTGAATGCGAATTAAGTCCAATAATTTCTAGGTGCATGTGAGCACTTTGCACTGAATGAAACACAAGGAGAAATGAAAGAATTAGTTTTATGTGTTTTAGTAATTTGggtgaaatgcattaaaaaatcattcaGGACTTTCAATTAGGATTAGCAAGTAGTAAAGTTCGGTGGCTGCCCAAGTAACTTTATTGGAGCTGTAAATTACACATACTAACCTCTCAAATGTCAATTTGAAGCCCTGTAATGGCAGAAAACTTTGTGAACTAAGTGCCATCCTTACAACCTTTATTAAAATGAAGTCGAGTTGAATACAATTTCATAACATATTTAGCAACTTTTGAGGTACATCTACTTTTGGAGTATCGCAAATTCTTTGCTGTCTTCTGACATTATGTACTTGTTGTAACGTGAATGAATCGATATTGAATTCTGCTAATGAGAGGTATCATATTGCCCAATTTAACATCCTATATTAAAGGCCTCTTCCCTTGCAATATATTTGTCAATGAGCAGCCAAGGCTCCTTAAGCACTCGTTTTGTTTCTGCTCTTGAATAAGTATTGCGCTTGTTTCCATCCTTGATAATTTCGTGACAAAAATGATGAAATCTAAATTCAACATgtaaagatggttttaaatatgAAGCAGAGACAGGAAATAACTTCAGTTCTAGGCAATCTCTCAACTATGTGCtgaaaggttacctccactacaaaacaataacttcttaAATTGTACAATCGAGAGCACAGactagaaagttttttatttaatggaaaagtcATGCTCTTTTCCCGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K4L0	ATP-dependent RNA helicase DDX54 OS=Mus musculus OX=10090 GN=Ddx54 PE=1 SV=1
Q8TDD1	ATP-dependent RNA helicase DDX54 OS=Homo sapiens OX=9606 GN=DDX54 PE=1 SV=2
A2YV85	DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003623 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08147 all species →	DBP10CT	DBP10CT (NUC160) domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR012541 all species →	Domain	DBP10, C-terminal	Interproscan
IPR050079 all species →	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959 all species →	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000004257.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.