Gene detail

Detailed information of ENSCIQP00000005535.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047139352.1, cactin isoform X1 [Hydra vulgaris]
Species abbreviation MALCI · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000006490

atttgtttattttttgttgctgttgttttagAGGAgtatgaaaaggaaaaaaaatgaaaaaatgcttgcTTCATTGATTTCTCTCGTTCTGAATTTACATTcaggaaaaaacaataaatcagaTTAGTGATATAAAATGGGGAGAGATAAAGATCATTCTCGTAAATCAGATCACAAAAAGTCAAGAAGAAGTTCTTCAGAgtcagattcagattcagatgatggaaaatataagaaaagtaaaaaaagtaaaagaatatctTACGAAAAGgagcttgaaaaattaaaagaagatcacAGAAGAAGAAAAGAGCTCATCAAATCAACAGAAACTGCCGAAGAAAGACGATTGAGACGTCTTGCGAAGAAAGAGCGTAAGCAGAAAAAGTACGATAGGTTGATGGGCGTAGACGATTTAGGTTACTCTAACACCAATAACCCATTTGGTGACACAAAACTTACAGAGAACTTTGTATGGTCTAAAAAAAATGAGAAAGAAGGTGTAAAGGATGTGAATAGTTATGAACAATTAAAACGCCAGCGTGAGAAGCAGGAAGAATTAAAAGTGgaattggaaaaagtgaaaaaacgaAGACAGGATCGGGAAAATGAGAAGTTAGCAAGAGATGACGAAATGCAATTGCTGCAACGAGAGAAAGAAGCAGCAATGTTTTCTGGTTGGGAAAAGCAAGAAGATGAGTTTCATTTGCATCAAGCTAGATTGCGTTCTTCAATACGAATAAGGGATGGTCGTGCGAAACCTATCGATTTACTTGCAGCGTATATTAATCCAGAGGAAGATAATTTAGAAATACAAATGCATGAACCTTATACATCACTAGTGGGTCTGTCTATCGACGATCTAGAAGACTTGATAGAGGACATTAAAATTTACATCACTATCGATCAGAAAAATAATCAGGAATTTTGGGAGgatATTACCTTCATTGTGAATGATGAATTggagaaactgaaaaagaaaagagataatgACATATCTGCTGCACGTAGAGATGTAATCAACAACGCAGTACAAACAGATATTCAATCAGTGTTTAAAGGGAAAACACATTCTCAACTGCTTGCATTAGAGAAGCAAATAAAAGGGAAGTTGAGAATGGGTGGATCAATAGATGTAGgGTACTGGGAATCATTACTGCAACAATTAAAAGCTTTCATGGCCAAAGCAAGACTTAAAGAAAGGCATCAACAATTTCTAAAGAAGAAGTTAAACGAGCTGAAATTGGAATCATCTGAAACATTAACCAAGAGAGATCGGCCGGAAGCATTTGTAGAAAGcagtaaaaacgaaaataaatcacAGATCGAGCAGGatcaaaataaacaagaaaatgcaATTGACAATACagatattaaagaagaaaaagaagaaaaggaaaatgaaGAAACTGTTGATGAAAAACTGGAGATTCAAAGGTTAACCGAAGCTGAACTTGCTGAACAAGCTATGTTGGAATATGAAGAAATGAATTACGAACCCAGGCTCATCCCGTTCAACGACATAGAGGAGGAAAAATGGTTGAATCCTACGGAAGATCAAAGTAAACTGacaTACTTAAGAGAGCAAGTGAAAGCAGGATCAACTGTGGAAGAGGAAATGGAGCGAGAGAACATGTTCAATACAGATGTCCTTCGTGAGAATGAAGAGTCGTTCAATACAACAATTGATATATCGACCAAAAAATATAAATGGTCAGACAAATATCGACCTCGCAAACCTCGTTTCTTCAATCGAGTACACACGGGGTACGAATGGAATAAATACAATCAAACTCATTATGACCAAGATAATCCTCCGCCCAAGATTGTGCAAGGGTATAAGTTTAATatattttatccAGACttgattgataaaacaaaaacaccagaatataCTTTGACGCAATGCGAAGACGATCCTGATTTTTGTATCCTTCGATTCAAAGCAGGTCCACCGTATGAAGATATTGCATTTAAAGTCGTAGACCGTGAATGGGAATGTTCAAATAGACATGGTTTCCGTTGCCAGTTTTATAACAACATATTtcaattgtattttcattttaaacgcTATCGATACCGAAGGTGATCATGATGAAAGAAAGTCAGTcattataaagaaatatatacCCGGCTCACagatacttgttcaaattcaacaaaaaatactgCTTTAATGCAAtgaatatgttgttaaaaatgaagctGCACGCATTGGGCATGCActaattcaaagttaacaatggagacaccagaacaatgtgtgaaatctgttcaaagttgagaaagacaccagaaggacgtcaatgacgtcgttctgatgtctttattgttaactttgaacagattccacacataACTCTGATGCACCCACTGTTGGCTTTGAGctagtaaataccggctgggcaGATACTTGTCCTAACTCAACTATAAAAACTCAAGATTGATACGACAAATTTGTAGTTAACAATGAAGCCACAGAAACGACGCGCCATGCTATTTATGTTCAgcgttaacaataaaggcacaagAACGGCGTCAATTGACGTTCCTCCAGCgtctctgttgttaactttgaacacacatAAATCTAGTGTTTCcataccccctggacacagaacgtaaatttaACGTGCATTAGTCTTTCAGAAGACGTCTAAGGCGTCTTCCACACATGTTACGTACGTTCAATTTTAGGTCCAGTGTCCAGGAGGTagtcaattttcaaaatgttgttgcATACTTGGTGTTAATCCATTTAAACTTGGTGCCAACAAAAGTCACGCTAAAAAAAATCACAGGCGAACtcattttttgcgttttttaatattattcccAGAAATATCAAGCAGAATGTGAAAATCCTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CS00	Splicing factor Cactin OS=Mus musculus OX=10090 GN=Cactin PE=1 SV=2
Q8WUQ7	Splicing factor Cactin OS=Homo sapiens OX=9606 GN=CACTIN PE=1 SV=3
F1Q8W0	Splicing factor Cactin OS=Danio rerio OX=7955 GN=cactin PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005514 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09732 all species →	CactinC_cactus	Cactus-binding C-terminus of cactin protein	Domain	Interproscan
PF10312 all species →	Cactin_mid	Conserved mid region of cactin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019134 all species →	Domain	Splicing factor Cactin, C-terminal	Interproscan
IPR018816 all species →	Domain	Splicing factor cactin, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21737 all species →	POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25058	CACTIN; cactin	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.