Gene detail

Detailed information of ENSCIQP00000006259.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_002167466.1, U3 small nucleolar RNA-associated protein 15 homolog [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000007391

GGCAACCCGAGCttgctgtttttcaaaagaacctaCTAAACTCTTCTCAGCTTCGGATGACAAGACCGCCAGATATTGGGACCTACCTACTGGAAAAGAAATAGCGCATGTAAAGTCACACAAGGATCGTACGATCACACAGTAAAAATTTGGGATACCCGTTCGTCTTCTGTTGCCATGGCAATGAATCATGGAGCACCAGTGGAGTGTGTAGTGACGCATCAAAATGGGAGTGTTTGTATCTCTTCGGGTGGTAATTACATCAAAGTATGGGACCTTCTCAGTGGTGCTGGTAGATTGTTCTCTCAATTCTCGTACCATCAGAAAACAATTACGACCATTTGTTTTGATAACGATTACAAGAGACTGTTATCAGGAGGACTTGACAGATACGTGAAGGTGCACGACATCTCCGACAGCTACGCTTTGGTGGCTAGTATTAGCTATCCATCCCCCATTCTGGCGATTGATCTGTCGCCGGACGGAAATCATTTAGCAGTAGGGATGGCCGATGGAGCAATTTCTTTCCGGCAtcgtataaaaagtaaaactaatacaGTGACAAGCTTACGGAAACGAAATTATCCACTCAAACCGGGTGCGTATCAATATAGAGTACGGAATCAATTTAGTAGACCGGAAAAGGATGACATAATTATCCGAGAGACATATAcaccaaaaatgtcaaaaactgaccgatatttgcaaaaatttcgaTATCGTGAGGCATTGGATTATGCTTTAGCTGACATTGGTAGTTTTCCTTCATATATTATAAGTTTATTGATTGAATTATCAAGGCAAAACGCGTTAGAATTAGCTTTGAGTAATCGAGATGCAGCAGGATTGAAAGATGTCATGTTGTTTTTAGCTAGGAATATTACGAATCCAAGATACGCAAAAACTTTGATACCCATAGCAAATTTAATAATTGataaataCTCGCATATGGTTGGTAAAAGTAAAGAATTCGATGCTTCGTTGAAACATTTAAGCAGAAGGATAGCACAGGATTTACAACCTTATAATGACATGATGAAACTTTTAGGAGCTATGGATCAAGTATTCTGCATGATGACACCATTACCTCATATAGACAGTGACGATCAAGAGGATGCTCTGATATATGACCATCAAGAGGATCCCTCTATACCTAAAACTTCTAGTATTAATTCAGTTGAAACAATTCAGGATGATGACAAAACTGAAAACGGCACTGTAGAACAGGATAAAATTGTAAGAGACTCAAGTATAGAAAGTGATATTAATGGAgatgttgattttaatattagTGGGGAAACCCCGGATGAAATAATTGTTATCTGATACTCAGCaaacatctgttcaaagttagcaaaagaaacactaaaaaaaaaaaatgaaatgtcttcaaagttaattaaacaattcaattaagacaccagaacaacgtcgttaagatcgttcaggtgtctttattgttacctttgaataaTTTGCAtccctttttctattgttttttatcattgactTTGAGGCTATACGTAATTGTTGGGTGCACAACAATATTCATGAAGAACTGTCCACAGATGTCCTGAAAAACAAATCAGGGGCGTGTTTAGGACCGTATCAAAGACCtgttatagattttttttgtgtaaatagtcaacggcttttagcaaagctccatcgtagatttttgatagggtcctaaatacgtctctgtagcTGCCCTGAAAATTTTGGGAACTTCCGTGATGGAGTTGATATTTACTGAATTTACTAGTGATGTTTTTAGAACAGAAGTTTTATAAACATCTATGAACAGAGGAGCTACGGAGTATTACTCTTTCATCTTCATTAATACTTACTTTTACAAAGTCTTActtgaaacactggaacaagtaaaatatgtttgaagttaacaatcaagtcatcagaacgatgtcaataAAGTCATTCTggtgtgtctttattgttatgtTAGCTCTGAACATACTtgtcaccttgttctagtgtttctgttgttgactttgcacaggtaaatgtttgctgtgtTGCTTTGAATTGATCTACTTAAAACGATTTCTAATACAAATCATGAAGACAGAACACGCAGCAAGTTGCCAGTTAAAGTTTATCAATTTTCAGTGTTATTAATCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZXZ2	U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus laevis OX=8355 GN=utp15 PE=2 SV=1
Q8C7V3	U3 small nucleolar RNA-associated protein 15 homolog OS=Mus musculus OX=10090 GN=Utp15 PE=1 SV=1
A2RRU3	U3 small nucleolar RNA-associated protein 15 homolog OS=Rattus norvegicus OX=10116 GN=Utp15 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005128 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09384 all species →	UTP15_C	UTP15 C terminal	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR018983 all species →	Domain	U3 small nucleolar RNA-associated protein 15, C-terminal	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19924 all species →	UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0045943 all species →	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000006259.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.