Genomic Location: chr12:81518299...81697955
NR annotation: XP_002157402.1, nuclear protein localization protein 4 homolog [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families
| CDS |
| ENSCIQT00000008282 |
| Transcript |
| ENSCIQT00000008282 |
| Protein |
| ENSCIQP00000007051.1 |
| UniProt accession | Description |
|---|---|
| Q8TAT6 | Nuclear protein localization protein 4 homolog OS=Homo sapiens OX=9606 GN=NPLOC4 PE=1 SV=3 |
| P60670 | Nuclear protein localization protein 4 homolog OS=Mus musculus OX=10090 GN=Nploc4 PE=1 SV=3 |
| Q9ES54 | Nuclear protein localization protein 4 homolog OS=Rattus norvegicus OX=10116 GN=Nploc4 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004918 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05021 all species → | NPL4 | NPL4 family | Family | Interproscan |
| PF11543 all species → | UN_NPL4 | Nuclear pore localisation protein NPL4 | Family | Interproscan |
| PF05020 all species → | zf-NPL4 | NPL4 family, putative zinc binding region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001876 all species → | Domain | Zinc finger, RanBP2-type | Interproscan |
| IPR007717 all species → | Domain | Nuclear pore localisation protein NPL4, C-terminal | Interproscan |
| IPR016563 all species → | Family | Nuclear protein localization protein 4 | Interproscan |
| IPR036443 all species → | Homologous_superfamily | Zinc finger, RanBP2-type superfamily | Interproscan |
| IPR024682 all species → | Domain | Nuclear pore localisation protein Npl4, ubiquitin-like domain | Interproscan |
| IPR007716 all species → | Domain | NPL4, zinc-binding putative | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12710 all species → | NUCLEAR PROTEIN LOCALIZATION 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0031625 all species → | Molecular Function | ubiquitin protein ligase binding | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14015 | NPLOC4, NPL4; nuclear protein localization protein 4 | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
