Detailed information of ENSCIQP00000007329.1 in Millepora alcicornis

Genomic Location: chr13:8627478...8681702
NR annotation: XP_047139659.1, NADH-quinone oxidoreductase subunit B [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P42026NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus OX=9913 GN=NDUFS7 PE=1 SV=1
Q0MQH9NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla OX=9595 GN=NDUFS7 PE=2 SV=1
O75251NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFS7 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003269 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01058
all species →		Oxidored_q6NADH ubiquinone oxidoreductase, 20 Kd subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006137
all species →		DomainNADH:ubiquinone oxidoreductase-like, 20kDa subunitInterproscan
IPR006138
all species →		FamilyNADH-ubiquinone oxidoreductase, 20 Kd subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11995
all species →		NADH DEHYDROGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0051536
all species →		Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0008137
all species →		Molecular FunctionNADH dehydrogenase (ubiquinone) activityInterproscan
GO:0048038
all species →		Molecular Functionquinone bindingInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan
GO:0005747
all species →		Cellular Componentobsolete mitochondrial respiratory chain complex IInterproscan
GO:0009060
all species →		Biological Processaerobic respirationInterproscan
GO:0015990
all species →		Biological Processelectron transport coupled proton transportInterproscan
GO:0032981
all species →		Biological Processmitochondrial respiratory chain complex I assemblyInterproscan
GO:0045272
all species →		Cellular Componentobsolete plasma membrane respiratory chain complex IInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03940NDUFS7; NADH dehydrogenase (ubiquinone) Fe-S protein 7EC:7.1.1.2
Non-alcoholic fatty liver diseaseko04932deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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