Detailed information of ENSCIQP00000007777.1 in Millepora alcicornis

Genomic Location: chr14:68225059...68339832
NR annotation: XP_002163582.2, eukaryotic translation initiation factor 4E type 3 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6NU27Eukaryotic translation initiation factor 4E type 3-B OS=Xenopus laevis OX=8355 GN=eif4e3-b PE=2 SV=1
Q28ET8Eukaryotic translation initiation factor 4E type 3 OS=Xenopus tropicalis OX=8364 GN=eif4e3 PE=2 SV=1
Q66HY7Eukaryotic translation initiation factor 4E type 3 OS=Danio rerio OX=7955 GN=eif4e3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005944 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01652
all species →		IF4EEukaryotic initiation factor 4EDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023398
all species →		Homologous_superfamilyTranslation Initiation factor eIF- 4e-likeInterproscan
IPR001040
all species →		FamilyTranslation Initiation factor eIF- 4eInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11960
all species →		EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000340
all species →		Molecular FunctionRNA 7-methylguanosine cap bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003743
all species →		Molecular Functiontranslation initiation factor activityInterproscan
GO:0006413
all species →		Biological Processtranslational initiationInterproscan
GO:0016281
all species →		Cellular Componenteukaryotic translation initiation factor 4F complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03259EIF4E; translation initiation factor 4E-Translation factorsko03012deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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