Gene detail

Detailed information of ENSCIQP00000008089.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047122734.1, protein NEDD1 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

ENSCIQT00000009458

ATGGCACTggttaataaatctttattggcTTCAGCAGGAGAAGATGTGCGCCTATGGTCAATGCCTAATTTAGATCTGGTATCAGTAAAAAATGGAACAAATGCCAATGTTGTCTCATGTAATTGCAGTGGAAATGGTCAGCTGGTAGCATATGCTCATGAAGACAGTGGTTTAACTGTTGCAAACTTAGTTGATGATAGtgcaacattaacaaaaataccAACAGGGTGTGagcagtccagtgttgcattcaATGGAACATCAAAATTTTTGGTTAGTGGTGGACTTGATTCAATAATCAATATCTGGGATATCAAGACATGCGTGGCTAAACGAACATACAAGgAACATGTTAATCCAGTCTCATGCTGCGTATTCAATTACAATGATACAGTGATTGCTTCAGGTTCTTCCAAAGGAGAGTTAATGTTCATTAATGTTCAGTCAGGTCTTTCATCAGATACCCTACCAGGATCAGACAGCCAGGTTATTCGAGGAATCTGTTATTCCTATTTTCAACGACATTTGCTCGCCACGATTAGTGATAGTGGTGCATTGAGTTTGTGGGACACGAAAGAGAAGAAGATTCTAAAGACTTTTCAGGATCATAAAGCTCCAGCAACTGGACTCGCATTTTCTCCTTTAAATGACATGCTATTGTGTTCAACTGGATTGGAcaagaagataattttttatgatgtcacaggtagaaaAACTGTGAAGACAATAAACACGGAAGGACCAGTGACTTGTTGCGACTTCATGCATGATGGTTGTACGGTGGCAGCTGGATCTGCTTCAGGTCgcatctttttgtttgatttgcgTCAAGGCTCCACTCCTATGAAAGTTCAACCCGCTCACAAAACTTCCATAAGAAGcctttcttttcaaaagattCCAAAGGACTCCAGATCACCAAGAAAACCTGCAGACGAACCTAGAGAAGCAAACCGTGATAATGGCGATAGTGCTGAAAAGGATACATTCAAATTTAACGGCCAAAAAACGTTAGTTCGAGATACTAGCTCAACGAACATTGATATTTACAGTagctataaaaatgaaaacagcttTTCAGATCTGATAGTCAACCGTGAAAACAGTACTATGGCACTACGTAATGTAATTAAGCTAAATAAAACCGAAACTCCAACTCTACAAAGAGCCCAGAAAATGGTGAATGATGATATCTTCTCACCAATTGCCACTGATTTATCGGTAGCAAAGACTGTAGCAACGCGGCAGAAGTCAGTGCCAAAGGTGAACAATGTGCGACCACAGTCAATTGCTGGTGAAGAAAGTATGGAAaTACGGCCAGGATATAGCAGAAGCAAATCTAGTGTATCGAAGTTGTCGACTGCTTCCAAAAGTACAGAGGATTTACGCTCAAAATTGAAAGAATCTGACAAAGATATGCAAGATGTTGGGAAAAAAGGAGGTTTATTTAAATCACCCTTCAAAAGGAAAGGGCATGTAAAAAGTGCTTTTACATATAACAAGCATTCAGATGAATCAGAAACGAGCTCGCTAGAATCTTTTTCCATTGAAGACAGAAAAGAGAAAAAGGAGGGTAAAAAGGAGAACAAAAAAAAGGAGAACAGTAGTGATCGGTCGAATGAATCAAGTTTTAAGCGAAACTATGATGGGGGACGTTTATCACCATTTGGGCGAAACATTGATACAACCCAATTGATGAATGACATACAGCATTCGTTGGCAAGTGGAATTAATAAATCTCCAAGTATACATTCAGGCGATTTTACACATTTGTATGCAACCGTGGAAGGGGAAGGCTCACATTTCCCAGCTGATTTTATACAACATATGATTGACGATGCTATGGAAGAAAATAGGTGGGATGACTTTGTGTTTCAAAATTCTGAATTAACGGAACTAGCAGATTGCTCCAATATTTTGGATCTTAGcaatcatttttctgtttttttgatacccacattctttttatcaaaattattgctACCTTCTTGTATGTGTTAA

Transcript

ENSCIQT00000009458

CACTTAATTGTTTTGCCGAGTGGATGAAAGTTACATGAAAGTGTGAGACAGAACAAGTGTCATGGCACTggttaataaatctttattggcTTCAGCAGGAGAAGATGTGCGCCTATGGTCAATGCCTAATTTAGATCTGGTATCAGTAAAAAATGGAACAAATGCCAATGTTGTCTCATGTAATTGCAGTGGAAATGGTCAGCTGGTAGCATATGCTCATGAAGACAGTGGTTTAACTGTTGCAAACTTAGTTGATGATAGtgcaacattaacaaaaataccAACAGGGTGTGagcagtccagtgttgcattcaATGGAACATCAAAATTTTTGGTTAGTGGTGGACTTGATTCAATAATCAATATCTGGGATATCAAGACATGCGTGGCTAAACGAACATACAAGgAACATGTTAATCCAGTCTCATGCTGCGTATTCAATTACAATGATACAGTGATTGCTTCAGGTTCTTCCAAAGGAGAGTTAATGTTCATTAATGTTCAGTCAGGTCTTTCATCAGATACCCTACCAGGATCAGACAGCCAGGTTATTCGAGGAATCTGTTATTCCTATTTTCAACGACATTTGCTCGCCACGATTAGTGATAGTGGTGCATTGAGTTTGTGGGACACGAAAGAGAAGAAGATTCTAAAGACTTTTCAGGATCATAAAGCTCCAGCAACTGGACTCGCATTTTCTCCTTTAAATGACATGCTATTGTGTTCAACTGGATTGGAcaagaagataattttttatgatgtcacaggtagaaaAACTGTGAAGACAATAAACACGGAAGGACCAGTGACTTGTTGCGACTTCATGCATGATGGTTGTACGGTGGCAGCTGGATCTGCTTCAGGTCgcatctttttgtttgatttgcgTCAAGGCTCCACTCCTATGAAAGTTCAACCCGCTCACAAAACTTCCATAAGAAGcctttcttttcaaaagattCCAAAGGACTCCAGATCACCAAGAAAACCTGCAGACGAACCTAGAGAAGCAAACCGTGATAATGGCGATAGTGCTGAAAAGGATACATTCAAATTTAACGGCCAAAAAACGTTAGTTCGAGATACTAGCTCAACGAACATTGATATTTACAGTagctataaaaatgaaaacagcttTTCAGATCTGATAGTCAACCGTGAAAACAGTACTATGGCACTACGTAATGTAATTAAGCTAAATAAAACCGAAACTCCAACTCTACAAAGAGCCCAGAAAATGGTGAATGATGATATCTTCTCACCAATTGCCACTGATTTATCGGTAGCAAAGACTGTAGCAACGCGGCAGAAGTCAGTGCCAAAGGTGAACAATGTGCGACCACAGTCAATTGCTGGTGAAGAAAGTATGGAAaTACGGCCAGGATATAGCAGAAGCAAATCTAGTGTATCGAAGTTGTCGACTGCTTCCAAAAGTACAGAGGATTTACGCTCAAAATTGAAAGAATCTGACAAAGATATGCAAGATGTTGGGAAAAAAGGAGGTTTATTTAAATCACCCTTCAAAAGGAAAGGGCATGTAAAAAGTGCTTTTACATATAACAAGCATTCAGATGAATCAGAAACGAGCTCGCTAGAATCTTTTTCCATTGAAGACAGAAAAGAGAAAAAGGAGGGTAAAAAGGAGAACAAAAAAAAGGAGAACAGTAGTGATCGGTCGAATGAATCAAGTTTTAAGCGAAACTATGATGGGGGACGTTTATCACCATTTGGGCGAAACATTGATACAACCCAATTGATGAATGACATACAGCATTCGTTGGCAAGTGGAATTAATAAATCTCCAAGTATACATTCAGGCGATTTTACACATTTGTATGCAACCGTGGAAGGGGAAGGCTCACATTTCCCAGCTGATTTTATACAACATATGATTGACGATGCTATGGAAGAAAATAGGTGGGATGACTTTGTGTTTCAAAATTCTGAATTAACGGAACTAGCAGATTGCTCCAATATTTTGGATCTTAGcaatcatttttctgtttttttgatacccacattctttttatcaaaattattgctACCTTCTTGTATGTGTTAAATAATGAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NHV4	Protein NEDD1 OS=Homo sapiens OX=9606 GN=NEDD1 PE=1 SV=1
Q3B7M6	Protein NEDD1 OS=Bos taurus OX=9913 GN=NEDD1 PE=2 SV=1
P33215	Protein NEDD1 OS=Mus musculus OX=10090 GN=Nedd1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005133 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR052818 all species →	Family	NEDD1 Spindle Assembly Protein	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44414 all species →	PROTEIN NEDD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000242 all species →	Cellular Component	pericentriolar material	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000008089.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.