Gene detail

Detailed information of ENSCIQP00000008151.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047123729.1, sortilin [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

ENSCIQT00000009526

ATGAAAAGTCCTGTCAACCCAAACAAGCTTATCCTGATATCATACCAGAGACGAGGGATTTTCGACACTTTCAAAAGTTTATTCAGCAAGGGAAAGGTCCAGCAATCTGTGCTAGTGATTACAGAAGATGCCGGAAAAACTTTCCACACTGTCGAATTACCTTTTATTATTCGTGAGAATGTTCCATTCGAATTCCACCCaacaaaagaaaattggattATCGCATTAGAGGAGCAGAAGACTGTGATGAGTATCAGTAGTATGGTGAACAAGGTTTATgGTCAAGCATGGattacaaaagattttggaaaGACCTGGAGGAAGATGATGTCTGGCTACATCGCAGAGTCAGTGAAATGGGGAGCGACGAACAGGGAAGATGATATTTACCTGGCCACTCATCAGCATGGAAACAGTATATGGCATATGTTCGAAAGTATGTCGCGAATGACGCTTTGGAAGTCACATGATGGAGGACACTTTTTTGAAGAAATAATCGAGCATATGTACAGCTTTGGTGTTCAAGGAGGCTTTGTGTATGCGTCAGTCAACTTCaCGGAAAGTGAAGATGACAAGAAAGTTGACAGACGTGTGTTGCACGTTTCGACAGATCACGGAAAAACCTTCCATGTAGCGCGGGTCCCAGATATATCAAACGATATGTTCTACGCAGTTGTTGAGATGCACAAAGGGACAATGTTTGTTCATGTCGACGAACTCGGAGACTCGGGCAAAGGTAAGCTGTACGTCTCTGGAGCCGATGGTATCATGTACACGAAGTCTCTGGATGATCATTTTTATACGAACACTGGTTTCACAGATTTTTACCGAGTGGAGTCAATGCAGGGTGTTTACATCACTCAGCAACTCAAGAAAGATTTAACCATGAGGTCGATGATCTCTTTTGATCGTGGAGTCAAGTGGCAACCACTGACCATTAAAAAGGAATATTGCAAGAATATGACAGTCACGTCTTGCAGTTTACATATCCACAATGTGTTCAGCCAAGTACGCCACTACCAGTACAACCCACCGCTATCATTGGCAAACGCCCCGGGAATCATTTTAGTTCATGGAAATGCTGGTGATGCATTGACAGGTGTTGGGGGAGTGTGGATGTCACGGGATGGAGGTTACACATGGACCAAGATAGCAAAAGGTGGACACCATTATGCCATCGGCGACAACGGCAATCTGATTGTTTTGGTGCCCCATATCGGAGCTACTGGTTCAACACTCATctaCTCGCTGAACCAAGGGCGGGTGTGGTACCACATGAATTACGACCGTTACGCAGCCAATGTGACTATAAGTGGGCTTGCTACTGAACCTCATTCCAGATCTCGCATGTTTAGCCTTTGGGGACACCACTCTCAATTGGAAAGCGATAAAACAGGCTGGGTGACATTCACGATCAGCTTTAAAGATTTACTCAACAAACAATGTGACATGAAAAAAGATATGAAGACATGGTACCCACACATCAAGAACGGAAAAGATGGATGCTTCTTGGGAGAGAAGATAGTACATTGGATCCCATATAAGGATAGCTTGTGTTACCTCGGACCCAATTTCAACGCGACAAAGAAGATCGAACGATGCAACTGCACAAAAGAAGACTTGGAGTGTGATTACGGTTATGAGAAAGATCAGTCTGGCGATTGTAAAAAGGACGAGACGATTCCACCCCTTGAAGTGTGCAAAGACGGAGAGGAAATGATCGAGAAATTTTCCGTAGGTTATCGCCGCATACCTGGAGACGTCTGCGAGTCAAAGTACAGCATGAATGATATAGTCAACTTCATCGACGAGAAAAAGAAATGCAAGCCGAAGAAGGAGGAAATTGAGGGAATCATCACAGAGGAGAAGAACGAGATCAGGGTGGAGGAAATGGAAGcagaagagaagaaagaaaaattagcaaaGCAAAAAAGAGAAATGGAAAAGGCCAATGAAAGAAAGCAAAAGTCCAAGTTGGTGTTGGTGCTGTTATGCGTGGTCCTAGTTTGTGGCATCGCGGGACTTAGTGGTTACTGGTTTCTCAAGAGGCGCCAAAGAGGAAGAAATGTGCACAAAGTTCTTTACGATGCAAGCTCCCTGGATGGTATAGAAGTCCTGAGCCCTGCAGACGGCAGTCATACTGAAAAAAGATCAAAGTTTGACCCCCGACCTAAATCCCATAGAGAATACCACGATGAAACAGATGCTGAGGACGATGCGCTGTTGTTACCATAG

Transcript

ENSCIQT00000009526

GAAACTTCTATCAAGAAGCAAGCAGCTAGCACATTTAAGACAAACATTTCAATTATAGAAGCACCAATTCTTGAAGTTCCCAGTACAGTTAGCAAAGAAcatgaaaagaaaatcaaaataacaacgCAGGTACGGCGAAGCGTTCGAGAATATTCAATCAGAAATCAACAACACGAATATCAGAAAGTTCTTTGGGATCATGAAAAGTCCTGTCAACCCAAACAAGCTTATCCTGATATCATACCAGAGACGAGGGATTTTCGACACTTTCAAAAGTTTATTCAGCAAGGGAAAGGTCCAGCAATCTGTGCTAGTGATTACAGAAGATGCCGGAAAAACTTTCCACACTGTCGAATTACCTTTTATTATTCGTGAGAATGTTCCATTCGAATTCCACCCaacaaaagaaaattggattATCGCATTAGAGGAGCAGAAGACTGTGATGAGTATCAGTAGTATGGTGAACAAGGTTTATgGTCAAGCATGGattacaaaagattttggaaaGACCTGGAGGAAGATGATGTCTGGCTACATCGCAGAGTCAGTGAAATGGGGAGCGACGAACAGGGAAGATGATATTTACCTGGCCACTCATCAGCATGGAAACAGTATATGGCATATGTTCGAAAGTATGTCGCGAATGACGCTTTGGAAGTCACATGATGGAGGACACTTTTTTGAAGAAATAATCGAGCATATGTACAGCTTTGGTGTTCAAGGAGGCTTTGTGTATGCGTCAGTCAACTTCaCGGAAAGTGAAGATGACAAGAAAGTTGACAGACGTGTGTTGCACGTTTCGACAGATCACGGAAAAACCTTCCATGTAGCGCGGGTCCCAGATATATCAAACGATATGTTCTACGCAGTTGTTGAGATGCACAAAGGGACAATGTTTGTTCATGTCGACGAACTCGGAGACTCGGGCAAAGGTAAGCTGTACGTCTCTGGAGCCGATGGTATCATGTACACGAAGTCTCTGGATGATCATTTTTATACGAACACTGGTTTCACAGATTTTTACCGAGTGGAGTCAATGCAGGGTGTTTACATCACTCAGCAACTCAAGAAAGATTTAACCATGAGGTCGATGATCTCTTTTGATCGTGGAGTCAAGTGGCAACCACTGACCATTAAAAAGGAATATTGCAAGAATATGACAGTCACGTCTTGCAGTTTACATATCCACAATGTGTTCAGCCAAGTACGCCACTACCAGTACAACCCACCGCTATCATTGGCAAACGCCCCGGGAATCATTTTAGTTCATGGAAATGCTGGTGATGCATTGACAGGTGTTGGGGGAGTGTGGATGTCACGGGATGGAGGTTACACATGGACCAAGATAGCAAAAGGTGGACACCATTATGCCATCGGCGACAACGGCAATCTGATTGTTTTGGTGCCCCATATCGGAGCTACTGGTTCAACACTCATctaCTCGCTGAACCAAGGGCGGGTGTGGTACCACATGAATTACGACCGTTACGCAGCCAATGTGACTATAAGTGGGCTTGCTACTGAACCTCATTCCAGATCTCGCATGTTTAGCCTTTGGGGACACCACTCTCAATTGGAAAGCGATAAAACAGGCTGGGTGACATTCACGATCAGCTTTAAAGATTTACTCAACAAACAATGTGACATGAAAAAAGATATGAAGACATGGTACCCACACATCAAGAACGGAAAAGATGGATGCTTCTTGGGAGAGAAGATAGTACATTGGATCCCATATAAGGATAGCTTGTGTTACCTCGGACCCAATTTCAACGCGACAAAGAAGATCGAACGATGCAACTGCACAAAAGAAGACTTGGAGTGTGATTACGGTTATGAGAAAGATCAGTCTGGCGATTGTAAAAAGGACGAGACGATTCCACCCCTTGAAGTGTGCAAAGACGGAGAGGAAATGATCGAGAAATTTTCCGTAGGTTATCGCCGCATACCTGGAGACGTCTGCGAGTCAAAGTACAGCATGAATGATATAGTCAACTTCATCGACGAGAAAAAGAAATGCAAGCCGAAGAAGGAGGAAATTGAGGGAATCATCACAGAGGAGAAGAACGAGATCAGGGTGGAGGAAATGGAAGcagaagagaagaaagaaaaattagcaaaGCAAAAAAGAGAAATGGAAAAGGCCAATGAAAGAAAGCAAAAGTCCAAGTTGGTGTTGGTGCTGTTATGCGTGGTCCTAGTTTGTGGCATCGCGGGACTTAGTGGTTACTGGTTTCTCAAGAGGCGCCAAAGAGGAAGAAATGTGCACAAAGTTCTTTACGATGCAAGCTCCCTGGATGGTATAGAAGTCCTGAGCCCTGCAGACGGCAGTCATACTGAAAAAAGATCAAAGTTTGACCCCCGACCTAAATCCCATAGAGAATACCACGATGAAACAGATGCTGAGGACGATGCGCTGTTGTTACCATAGACCGTGGAACATGGTCTACTCTGTACTGAGTACGCCATGACTGAAATAAACTTGTTGTATCGATTTTTTCTAAGAAGAACAGTGCTTTGCAGTTAGCTGTTTTCACGCTTTTTTGAGTGAACCAATTTTATAGTAATCCAGTaatagaagcaaaatattttttcagaaattgttaagtatttttataCTGCAATGGTTTGTCAGCGGTGTTTGTCATCGATTATGATGTCAAAATCTCGAATATCCTGTTGGTGATTGTAGTTTTCTAGCTAACGCCTTAAGTAAATTCTTTTAGTTCATTCTACAGGGAAACGTAGATAGCTCGAAGACCGtagaatttttcagggcaggagaGGTTTTTTGTAATAAGGGTACTTCGATAAACGTTTCATCTACAATACATGAAAGAAAGACCCCGCAGGGAagaaattttgtagtttttttttgcccagatactcttaaaactgcattttcaatgggaaatttaacccatagatgaacaCAATCggcatatttttccaaaatcagggcactttattcaattttcaaaaaagggcagatCAGACTCGCTTGCTTTcgcaatattttttgcatttatttatagTTCTATTATTTAATTGtagcatatatttttcttttgttaaggaTAGCAATCATAGGGTAACTGTTTTCTTGGTGACggcattatttatattaatacgCACGCTTGTATATGTGAGAGGTTGGTTTTATTTATTGTATGATGGGCCAGATGAAAACACATGGAATCTATTTCTGGCCACTTTTCCCATTcgtaacccctgaaaacacccaaaagtctttgtttttctggtgttttcagggtgtataaaatGGGTACATTGGCCAGGAATGTGTTAACTTGTCAAGGTACTTGCTTCCATTTTCTTGGCTGAAACGTCAGAGTCGTCAAGTTGCAAGAAATGTGTCTCTAATATGCGAAACCTCTCTTTGCACGAGCCCATACGAATTCACCGTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PHU5	Sortilin OS=Mus musculus OX=10090 GN=Sort1 PE=1 SV=1
O54861	Sortilin OS=Rattus norvegicus OX=10116 GN=Sort1 PE=1 SV=3
Q99523	Sortilin OS=Homo sapiens OX=9606 GN=SORT1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0006895 all species →	Biological Process	Golgi to endosome transport	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016050 all species →	Biological Process	vesicle organization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12388	SORT1; sortilin	-	Neurotrophin signaling pathway	ko04722	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.