Gene detail

Detailed information of ENSCIQP00000008525.1 in Millepora alcicornis

Genomic Location: chr14:79261140...79643622
NR annotation: XP_047146367.1, dynamin-1-like protein isoform X3 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSCIQT00000009966

AAATACTACAATTTTGAAACAATACGTCAAGAAATAATGAAGGAGACAGAGAGGACAGCTGGTGGGAATAAGTGCATAAGTGATGAACCAATTAATCTAAAGATATACTCCCCGTATGCTGTTAATTTGACGTTGGTAGATTTGCCTGGAATGACAAAGGTACCAGTTGGAGATCAACCCCTAGACATAGAGGTACAAATTCGCACATTAACACtgaagtatattcagaatcctaatGCTTTAATATTAGCCATAACAGCAGCAAATACTGATTTGGCCACTTCAGAGTCAATAAAAATAGCTAAAGAGGTTGATCCAGATGGTAACCGTACATTGGCAGTTGTTACAAAACTTGATCTTATGGACCATGGAACTGATGCTATGGATATACTTTATGGAAGAGTAATTCCAGTAAAATTGGGCATAATTGGTATTGTGAACCGAAGTCAGTTGGATATCAACAATAGAAAGACTATATCAGATGCTTTAGCAGATGAatatacatttttccaaaaacattaccCAATGATAGCAAACAGAAATGGGACCATCTACTTAAAAAAATCACTGAATAagTTACTGTTAAATCATATCCGCAATTGTCTACCAGAATTGAAAACACGTGTTAATGCACTGGTGTCCAAATATCAACAGTTGATGACATCCTATGGTGAACCAGTCGTTGATCAGAGTTCGACTTTACTTCAACTAATCACAAAGTTTTCGTCGACGTATTGTGAAACAATTGAAGGCACATCCAAGAATATTACCACATCAGAGCTTTGTGGTGGTGCTCGCATTTGCTATATCTTTCATGATGTATTTGGGGCCACACTTCATAACATTGATGCATTGAATGGATTATCcaagaaagatattttaacaGCAATTAGAAATGCTACTGGCCCAAGACCAGCTTTATTTGTTCCGGAAATATCTTTCGAGCTGCTTGTGAAAAGACAGATTCAACAGTTAGAACAGCCAAGCCTTCGTTGTGTGGAGCTTGTACATGAGGAAATGCAGAGAATAATTCAACATAGTCTACATCAGgtCATAGAGATAAGGCGATTCCCAAAAATGCAAGATCAGATAATAGATGTTGTTAGTTCATTGTTGCACAAGAGATTGAGGCCAACAAATGAAATGGTAgAAAACTTAGTACAGATTGAGTTATCATACATCAACACGAACCACCCTGATTTCAGTGATGGAGCATCAGTGGTTTCTATGATTGCTgccaatgaaaatAGAcgtaaaagagaaaaaatgaatatagtgACAGAAGAGAATACTGAACCCAGTCCTCCAACAGAACGAGTGTACCATTCAAGTAATGCACCAGCCAATCAGCAGGGTGTTGTCACGTGGATGTTGCACCCATCAACTGTACAACCTGACAACACCAACTCCACATTAGCAGAATCAATGCATGAATTAAGGCTAAGTGATATTAGTCAACCAAAGAATCGAGAGCTATCCGAAAGAGAACAGTTAGATTCAGAATTGATCAgacAACTAATTCGGTCCTATTTTAACATTATCCGAAAGAATATACAGGATAGTGTACCAAAAGCTATCATGTGCTTCTTGGTTaactatatcaaaacaaaaatacaaagcgAATTGGTGGAAAAACTATATAGGGCTGAATTACTAGAAAATTTACTTAGTGAAGCTGAGCAAGTTCATATCAGAAGAAAGGAAGCCTCAGAAATGCTCCAGgcatTACAGCGTGCTGCTAACATAATAGGTGAAATCCGTGATTTTCATGCTTGGTAGCTCTTATATACGGTCATGATTGGAATTACAgatgatttatttatatttacaaattttcggCTTATTTCATACAGTTTGAAACAATCAACATTTCGACTACCCAGCTCAACTATTTTTGAGAAagggatttttttcaatttccttaacCGGATGGGTTGTCACCAGACATcgtgaaattaataaacacgaaCTGACTAATgacatattttggaatttttgtgcTATTTACATTATCAACATAGTTGTTTCACCGGTTAAATTTGTAAACCGGTTTAgtaaattgttttagaaatactGTTCTTCATAAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SXN5	Dynamin-1-like protein OS=Danio rerio OX=7955 GN=dnm1l PE=2 SV=1
Q2KIA5	Dynamin-1-like protein OS=Bos taurus OX=9913 GN=DNM1L PE=2 SV=1
O00429	Dynamin-1-like protein OS=Homo sapiens OX=9606 GN=DNM1L PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001302 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01031 all species →	Dynamin_M	Dynamin central region	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF02212 all species →	GED	Dynamin GTPase effector domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020850 all species →	Domain	GTPase effector domain	Interproscan
IPR001401 all species →	Domain	Dynamin, GTPase domain	Interproscan
IPR003130 all species →	Domain	Dynamin GTPase effector	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR000375 all species →	Domain	Dynamin stalk domain	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000266 all species →	Biological Process	mitochondrial fission	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17065	DNM1L; dynamin 1-like protein	EC:3.6.5.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →