Gene detail

Detailed information of ENSCIQP00000011825.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_002157646.4, AT-rich interactive domain-containing protein 1A [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

ENSCIQT00000013768

ATGTCGGCAGTATCGGCAATGTCTCCTGCTCCATCATTACAAGAAGATTTAGAAGGATTAGAAGGACTGAGTCCATCAATTCCGCAATCTCCGATGTCGCCAGACGCGCAGAAGTTATTGAAAGCACGTGCTTCACCACGGCAATATGAACAGCTATCCAAAGTCTACGAGCaaattactgatgaagaaaagaaGTTATTCATGGAGAGATATCTAGCTTTCATGAGTGTAAACGGGACGCCAGTCACAAAACTACCGATTATTGGAAAACAGCCACTTGACTTGTATACCTTGTGTCGTGCTGTTTGCGAAAGGGGTGGCATACAAgagGTTCTCCAAAAACGACGTTTTCGTGAAATTCTTACTTTGCTTAATCTTCCAACAACAAATGGCATTTTAGCATATACAGTAAGAGAGCAGTACATGAAATATTTGCAAGTATATGAATCGAAACAGAAAGACGATTTGTTGAAACAGTGGAAAAAGAATCATGTCTCTGTAGACACTAAATCTGATGTGGCGACAATTGCTTTAAATGAGACTTTTAAGTCCATTACAAAACAAGAAACTGCACCAACACAGCCAAACAGCACACCTCATACTATAGCACCAGCATGGAATAGTTCGTATGGAAATACAGCAATAAGCAGCAGCAAAACTAGTGTGCAAAGCTCAACGAATGGAACACAGTTTAATCCTAGAATGTCATACCCAAACCCTATGGCTTCAAATCAAGGTGCACCTGCCTATGGTCAGAGTAACATGGGGAATTTCGGACCAGGGCAAGAGGTTCCGCCAGGATATCCAGGCTACGGTTATCAAAATAGCATGTATCCGAGGGGGCCAATGCCAAATTATGGCCCAATGAGACCCGGTCTACCAAGTGATGCACTTCCGGGAGGTTGGCCCAGAGGGTATTCCCCAAGGCAAGGTCCACCAGAGTTATTCCCAGAGGGCCTTCAAAGAATGCCTTGGAGTCAATCTCAGAGACATTCAATGTCAGCATTTTCTTCTCCTGGCTACCCAATTACTTCTGGAAAATCAAGAACCTCAATCTCTCGGGACCAACTCAATCAAATGAGTGCTCAGCAACTGGAACAACTCAAACAGGAACAACAGCTAAAGTTGCATCAATATCAACAGCAACAGGCAAGATACCACCAGCCAGACCATGctaacaaagttttgaataaaggAAGTAGAGCTTCTCATCAGCCACCACATGATGTCAAACAAACCCATACACCCACGCAGTCATCTAAACGTGAATTTTCTTTTCCGCCAGACAGCATCGAAGGAACGAAACCAGTcaccaagaaaagaaaaaaattgacttcAAAGGATCTAGGGCCAGTTGAAGCTTGGAGGATCATGATGTCACTGAAATCTGGCCTTGTATCAGAATGCACCTGGGCGATAGACactttaaatatattactttctgACAATAACACAATCACCTATTTTCACTTAAGCAAACTTCCGGGACTATTAGATACGCTTATGGATCACTACAGACGTTCCCTTTCTTCTTTATTCAAACAATTTCAAGATCGTGAAATTCCTCTAGTTCCATCCTTCGAAAAAGACTTGACTgatgaaaaagcaatttttaaaaatatagaccAAAAACTAACAAGTCTATGGGTAGGTGTTTGTAAAAATTCCAAAACGAGTTTTTCATCGAATATAGCAGCTTCAGCGATAGTTGAAAATGCAGTAGAACAATTTGACGGTGGCAAAAAAAATTGGGCAAGCGGTGGCGGTGATAATACGTCGCATATACAAACTAATTTCCCGACTAGAGCTGTTCAACTGAAAAGATACCCAGAAGGACTTACGTACATTACAAATGCAGATTTAGAGAAACAACGGAAGCTTGGTGCCCTTAAGAAAAATAGGGGGAAAAAGTCACTAGATGAAAACGTAGAAGTCAGTAATGAATCATCCTCAACAGATTCAAAGACTCATGAGGCAAATTCTATATGTCTTGGTGTGCTTGATGATCTTTTGAAAGAGTGCACGGAGACTACTGAGAAAAAACAAGATAAACCTGACAGCTTACTTAATAGTGTTATTTGTAATCTTGAACTTGACGTACTTTGTGACAAAAAGTATTTGGAagattctaaagaatttatatgtTATTTGAATCGACGACTTCATCGTGAGCATCGGGGAAATGTTGAAAGTGAACAGTGTGTAGTAAAACAGAAGTCACCCTTCGTTAGCGCCCCAGAAAACGATCGATCGTTATTCAAACGctgtgttgctttatcaaatatatttcgTAGTTTATCTTTTATTCAAGGAAATGATTCGGAATTAGCAACCCATGTTGGGTTAATTTTGATAGCTGGTTACTCTTTATTACATAAACATGAACATACTCTAACAGATCATTCACAATTCAAACTTGGTTTAGATGAGCGAACTGTTATAAACAATGCGTTTTCTAATGACATCGATGGATCACATCGTGATGCTTTGTATACCATTCGTGAAAACATGCTGGTAATGTTATCTAATGTTGGCGGACACTTAAATCTCACTAATATGAAGAAAGAAGTTTATAGTCCTTTAGTTAATGGGTTACTTCATTGGGTCTCATGTCGCTCCTCCGAAGCTCTTGATCCAATGCCTACAGCACCAGGGACTAATGCACTTTCTGCGCAACGGTTAGCTATTGAAGTACTTGCAAAAATGactattaatttgaataatgtagAATATGTAATGACGCAACCAAACGAATCTCAACTGGAAGACATTGGAGAAATTTTAGTTAAATATGTTGCTAAAAAACACCCAATACCAGCGCGTGAATTTGCAATCATACTGTTAGATAACCTCTGTCATTCGGAAGAATTCTCTCGAATGCTTTGTAAAACTAAATGTGCTGTGAGTAATCTAATGAAGTTTTTAtatgaagctgaaaaaaatactgcaaattacTTGACGAATGGGGGTTGTGTAAAACCAGGAGTAAATGCAGAGGACATATGTGGTACCAGTATAAGTCTACTACGGCGTTCTGTAAATATTCTATTGTCGCTTTCTAAAACGCCGTCTAATCGACGTTATCTTACTCCCTATATGGACGATATATTGTCATTATCAACGTCGCAGATGATTGACACAAGTGTTTTAGCTCTATTAGCGTCCGTCCTTTTTGAACTTGGTGactga

Transcript

ENSCIQT00000013768

GTCACATTTACCAGTCACCAACAAGCTCTCAGCTCCTCCGACTCCTATGTCGGCAGTATCGGCAATGTCTCCTGCTCCATCATTACAAGAAGATTTAGAAGGATTAGAAGGACTGAGTCCATCAATTCCGCAATCTCCGATGTCGCCAGACGCGCAGAAGTTATTGAAAGCACGTGCTTCACCACGGCAATATGAACAGCTATCCAAAGTCTACGAGCaaattactgatgaagaaaagaaGTTATTCATGGAGAGATATCTAGCTTTCATGAGTGTAAACGGGACGCCAGTCACAAAACTACCGATTATTGGAAAACAGCCACTTGACTTGTATACCTTGTGTCGTGCTGTTTGCGAAAGGGGTGGCATACAAgagGTTCTCCAAAAACGACGTTTTCGTGAAATTCTTACTTTGCTTAATCTTCCAACAACAAATGGCATTTTAGCATATACAGTAAGAGAGCAGTACATGAAATATTTGCAAGTATATGAATCGAAACAGAAAGACGATTTGTTGAAACAGTGGAAAAAGAATCATGTCTCTGTAGACACTAAATCTGATGTGGCGACAATTGCTTTAAATGAGACTTTTAAGTCCATTACAAAACAAGAAACTGCACCAACACAGCCAAACAGCACACCTCATACTATAGCACCAGCATGGAATAGTTCGTATGGAAATACAGCAATAAGCAGCAGCAAAACTAGTGTGCAAAGCTCAACGAATGGAACACAGTTTAATCCTAGAATGTCATACCCAAACCCTATGGCTTCAAATCAAGGTGCACCTGCCTATGGTCAGAGTAACATGGGGAATTTCGGACCAGGGCAAGAGGTTCCGCCAGGATATCCAGGCTACGGTTATCAAAATAGCATGTATCCGAGGGGGCCAATGCCAAATTATGGCCCAATGAGACCCGGTCTACCAAGTGATGCACTTCCGGGAGGTTGGCCCAGAGGGTATTCCCCAAGGCAAGGTCCACCAGAGTTATTCCCAGAGGGCCTTCAAAGAATGCCTTGGAGTCAATCTCAGAGACATTCAATGTCAGCATTTTCTTCTCCTGGCTACCCAATTACTTCTGGAAAATCAAGAACCTCAATCTCTCGGGACCAACTCAATCAAATGAGTGCTCAGCAACTGGAACAACTCAAACAGGAACAACAGCTAAAGTTGCATCAATATCAACAGCAACAGGCAAGATACCACCAGCCAGACCATGctaacaaagttttgaataaaggAAGTAGAGCTTCTCATCAGCCACCACATGATGTCAAACAAACCCATACACCCACGCAGTCATCTAAACGTGAATTTTCTTTTCCGCCAGACAGCATCGAAGGAACGAAACCAGTcaccaagaaaagaaaaaaattgacttcAAAGGATCTAGGGCCAGTTGAAGCTTGGAGGATCATGATGTCACTGAAATCTGGCCTTGTATCAGAATGCACCTGGGCGATAGACactttaaatatattactttctgACAATAACACAATCACCTATTTTCACTTAAGCAAACTTCCGGGACTATTAGATACGCTTATGGATCACTACAGACGTTCCCTTTCTTCTTTATTCAAACAATTTCAAGATCGTGAAATTCCTCTAGTTCCATCCTTCGAAAAAGACTTGACTgatgaaaaagcaatttttaaaaatatagaccAAAAACTAACAAGTCTATGGGTAGGTGTTTGTAAAAATTCCAAAACGAGTTTTTCATCGAATATAGCAGCTTCAGCGATAGTTGAAAATGCAGTAGAACAATTTGACGGTGGCAAAAAAAATTGGGCAAGCGGTGGCGGTGATAATACGTCGCATATACAAACTAATTTCCCGACTAGAGCTGTTCAACTGAAAAGATACCCAGAAGGACTTACGTACATTACAAATGCAGATTTAGAGAAACAACGGAAGCTTGGTGCCCTTAAGAAAAATAGGGGGAAAAAGTCACTAGATGAAAACGTAGAAGTCAGTAATGAATCATCCTCAACAGATTCAAAGACTCATGAGGCAAATTCTATATGTCTTGGTGTGCTTGATGATCTTTTGAAAGAGTGCACGGAGACTACTGAGAAAAAACAAGATAAACCTGACAGCTTACTTAATAGTGTTATTTGTAATCTTGAACTTGACGTACTTTGTGACAAAAAGTATTTGGAagattctaaagaatttatatgtTATTTGAATCGACGACTTCATCGTGAGCATCGGGGAAATGTTGAAAGTGAACAGTGTGTAGTAAAACAGAAGTCACCCTTCGTTAGCGCCCCAGAAAACGATCGATCGTTATTCAAACGctgtgttgctttatcaaatatatttcgTAGTTTATCTTTTATTCAAGGAAATGATTCGGAATTAGCAACCCATGTTGGGTTAATTTTGATAGCTGGTTACTCTTTATTACATAAACATGAACATACTCTAACAGATCATTCACAATTCAAACTTGGTTTAGATGAGCGAACTGTTATAAACAATGCGTTTTCTAATGACATCGATGGATCACATCGTGATGCTTTGTATACCATTCGTGAAAACATGCTGGTAATGTTATCTAATGTTGGCGGACACTTAAATCTCACTAATATGAAGAAAGAAGTTTATAGTCCTTTAGTTAATGGGTTACTTCATTGGGTCTCATGTCGCTCCTCCGAAGCTCTTGATCCAATGCCTACAGCACCAGGGACTAATGCACTTTCTGCGCAACGGTTAGCTATTGAAGTACTTGCAAAAATGactattaatttgaataatgtagAATATGTAATGACGCAACCAAACGAATCTCAACTGGAAGACATTGGAGAAATTTTAGTTAAATATGTTGCTAAAAAACACCCAATACCAGCGCGTGAATTTGCAATCATACTGTTAGATAACCTCTGTCATTCGGAAGAATTCTCTCGAATGCTTTGTAAAACTAAATGTGCTGTGAGTAATCTAATGAAGTTTTTAtatgaagctgaaaaaaatactgcaaattacTTGACGAATGGGGGTTGTGTAAAACCAGGAGTAAATGCAGAGGACATATGTGGTACCAGTATAAGTCTACTACGGCGTTCTGTAAATATTCTATTGTCGCTTTCTAAAACGCCGTCTAATCGACGTTATCTTACTCCCTATATGGACGATATATTGTCATTATCAACGTCGCAGATGATTGACACAAGTGTTTTAGCTCTATTAGCGTCCGTCCTTTTTGAACTTGGTGactgacttttagttttgataatctatttttgctcaaagatatttttttctttcgtagaaatttagaaaatcttttactttaaagaatttttactaAAATGCTTTCGTAGGACctgatttttgaatcaaatttttaaaacactgaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2BH40	AT-rich interactive domain-containing protein 1A OS=Mus musculus OX=10090 GN=Arid1a PE=1 SV=1
O14497	AT-rich interactive domain-containing protein 1A OS=Homo sapiens OX=9606 GN=ARID1A PE=1 SV=3
E9Q4N7	AT-rich interactive domain-containing protein 1B OS=Mus musculus OX=10090 GN=Arid1b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004947 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12031 all species →	BAF250_C	SWI/SNF-like complex subunit BAF250/Osa	Repeat	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033388 all species →	Domain	SWI/SNF-like complex subunit BAF250, C-terminal	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021906 all species →	Family	SWI/SNF-like complex subunit BAF250/Osa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12656 all species →	BRG-1 ASSOCIATED FACTOR 250 BAF250	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035060 all species →	Cellular Component	brahma complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071565 all species →	Cellular Component	nBAF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000011825.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.