Gene detail

Detailed information of ENSCIQP00000012281.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_012554375.2, la-related protein 7 [Hydra vulgaris]
Species abbreviation MALCI · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000014298

GTGAACATTATTTTGATAGAAACatagaaagagaaagaaaaaatacaaagaaatatatCAAGTCAAAAGGTATGGATGAAGGcaaatctcagaaagaaaaaccAAAGAAAGACATTCGCAGAAGGCACAAAAGAGTATTAAATTTGTTACAACAACAGttggaGTTTTACTTTGGCGATGCAAATCTTCGACATGATCGCTTTTTGCGGAAGAAAATTGAAAGTAACAAAGATGGCTATGTTGATTTGTCAATGATGCTGACGTTTAACAAACTGAACAAACTGACAACAGACCTGAAGTTGATTTCAAAAGCTGTGAAAAATTCAAAGCTTCTCCAGTTAAGCgatgatgaagaaaaagtaagaaGAACGGAAAAGCTTCCAGAACTTAAAAATACAGACGACCAGACCGTATATGTGGACCAGTTGATAGCGTACTGCGAtcatgattggttaaaaaatgttttctctgtGTGTGGAACAGTTGATTATATCAGCTTACCAAGATACCCAAACAATGGCAAGATCAAAGGCTTCGCTTTCATCGAATTTTCAACGCTGGAAGGTGCAGAAAAAGCTTGccaaATGTTTAATAACGCGAAttcaagaaagaacaaaaataaaaagcgaCACTCCTCATCTGAAGGCAAACTCAATgaagataagaaagaaaaacgTAAACGGAGGAGATCATCAAGTTTCACAGAGACTGAAAGTGAaagcaaaatcagtaaaaaatctCGTCGAAGGAGAAGCTCAAGTTTTAGTGCAGATGTTACCTCAACTGATCCACTGAAGAAGGATTCAGTTGTAACATTTAGAGAAACAGAGTCAAATGCTAAAGCAGGAAATAAAGATGTGTCTTCCGACACAGAGACTCAGGAATTCACTAAACCTTCTGGAAAGCTGAAGAGGAAAAGTAAAACAGAAGGCGAAGGAAAATCTAATAGCAAAATAGAAACGGAAGGGGGAGggatttctaaagaaataaagaagaggAGACTGAAACATAAGACAGAACTTGAAACAGAAGGTAAAGCAGAAAACACAAGAGCAAGAGAATCAAATGttgaaatatcagaaatttcAGGAACGGAAGCCATTCTttcaaatgaagatgataaacttcatgaaaagaagagaaagaagagCCGTAAGCACCGCAAACGCAAGGATAGTGATGTGAAAGAGATACCTTTACCACCGTTATATGTTATACCAAAGTCAGAGTGGTTGTCTTTGAAACAACAGTACAAAACACTTCAACGTAAAGAAATGcagaaactaaagaaaacaaCTCGGATTATAAAGAGTGAGCGGGTCAGGCTGGCCGAGCTAAAGGCGAGTAGGGAGGGAGCAAAGCGCGAAACCAAGGACGATGCTGGAAGTAAGCATGGAGACGTTCTCGAACCAAACCACGATAGAGAAATTCCACCAAtcaaaaagagcaaaaaggaCAGAGAAAATAATTCGTTAAAGAAGGGGAACAACGAGAGCGAGCCAGCGAAAGTAAAGAAGGAAGTGAAACAGCTAGATATGAAACCAGGCACCGTGATGTCGATCAAAACAGCATCTGACAATCtgaataaaaaagacattaaaGAACGCTTGTCAAAACTTGTCGATGTAGCGTATGTTGATTACACCAGTGGGGATCCAAATGGTTACGTTCGCTTTGCTTCAGAAGAAATGGTCGAAAAGATTGTCCAGCATCCcttggaaaaatttaatttcactttagCAAAGTTAACAGacaCTACGCAAGGCATCAACAGCACAAAGTCATATCAGATTTGAATAAATTATGTACTCTCTTATATTGGAGGATACTTTTTTAGGTTACTAATTTGTAAATAgacaggaaaatatttaaaaacacgtGATCAAATTTGGATGTTGTATTtcttgttgttgattatttgtgAAATCAGTTTTTGAAACTGCGTCAATTCCTGTTGGAAATTGCGAATGGAAAGAGTGGAGAAGTTAAGGAAGGGGTCAGTAAGGAAGGGTTCAGTGTAACTTCGTTATGCAGAGTTAGTAGCATTGCTCAAAGTTATCTCAGGATGTTATGATGCGCTTGCAATATTGAAGTATGTAACGGTTCACGTTATATATCCTTTTTCGACTAACTTTCATTACAACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZWE3	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1
Q5XI01	La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2
Q05CL8	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005516 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05383 all species →	La	La domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF08777 all species →	RRM_3	RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034887 all species →	Domain	LARP7, RNA recognition motif 1	Interproscan
IPR014886 all species →	Domain	La protein, xRRM domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR002344 all species →	Family	Lupus La protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000012281.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.