Gene detail

Detailed information of ENSCIQP00000012406.1 in Millepora alcicornis

Genomic Location: chr2:231835750...231895781
NR annotation: XP_047128946.1, phosphoacetylglucosamine mutase isoform X1 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSCIQT00000014445

AAAAAATCTACACGAAGAAGGACATATATTCATGAAAATGAACAAAGAGTACATTGAGAAATTGGTGAAACTTCATCCAAAACCTGACTTTCATTTTACATATGGTACTGCAGGATTCAGATCACGAGCAGATGTACTGGACAGTGTAATGTTCAAAATGGGAATTCTTGCCGCACTGAGATCAAGATCCAGAAATGGCCaATACATTGGCGTTATGATAACAGCATCTCATAATCCAGTTCAGGATAATGGAGTGAAATTGATTGACCCTTATGGAGAAATGCTGGAACAGTCATGGGAGAAATATGCAACAAAGCTGGCGCAAGCTGAAGACGCCATGTTTTTTTCAGCTTTGGAGGAAGTGATATCTGAGTTACAAATCAATATGGATATCAAGCCAAACGTGGTTATTGCAAGGGACACAAGGCCATCTAGTGAAGGATTGCTGAATTCAGTGAAGGAAGGTGCAGAAGTATTAGATGCAAATGTTATCAACAATGGTTTATTGACGACGCCCCAACTTCATTATATTGTCTGTTGCTTAAACAAGCCTTCTTATGGCACACCATCAGAAGATGGCtattatcagaaatattcaaCTGCATACAAGAAACTCAAGTCACTGttgGGATGTAGCTCAGTCTCCAAAGTGACAGTAGATGGTGCTAATGGCGTTGGTGGAATTAAAATAAAGGAGATGATGAAACACCTGGGTGATGTTATGGATGTTACTGCATGTAACGATGGTTCCAGTGGTACTCTGAATGAAGGGTGTGGTGCAGACTTTGTTAAAACGAGACAGAAGCAACCAGCAGgTATAACATTTGAATCTGGGAAAAGGTACGTTGCTTTTGATGGAGACGCAGATAGGATCATATACTTCTACAAAGATGAGGgTGGCAATTTCCATATGTTGGACGGGGATAAAATTTCTTGTCTAATTGCATCGTTTATCAAAGGATTGCTTGATGAAATTGGGATCACTCTAGACAAGGGAGTAGGGCTTATACAAACAGCGTATGCGAACGGAGCCTCTACAGATTATTTAGCAAACAAATTGgAAGTTCCAGTTGTGATAGCAAAAACTGGTGTCAAGCATCTTCATCATAAAGCACTGGGTTTTGACATAGGAGTTTACTTTGAGGCGAATGGACATGGCACAATAATTTACAGTGAAGAAGCTGAGCAAAGGATCCGATCTCCGGAAGGAAATCTAAGTGATGACCAAAAACGTGCATCAGAAACCTTGGCAGCATTTATCGATTTAACAAACCAgacagtTGGAGACGCAATATCAGACATGTTACTTGTGGAGACAGTGCTCAGTGCCAAACAGATCGATTGCAGTGCTTGGGATAAAGAATATACAGATTTACCAAACAAGCTAAATAAGGTTTTGGTTAAGGATCGAACAGTGATAAAGACAAACGATAATGAGACTAGAGTGACGGAACCAACAGAGCTGCAGAATAAAATAGACGAACTAGTTAAAAATTGGACGAATGCAAGATCTTTTGTCAGACCATCAGGCACAGAGGACGTTGTCAGAGTATATGCAGAAAGCGAGACAAAGGCAATCACCGACAATCTGACGGCGTCAGTCAGCCAGCTGGTTTACGATATTTGTGGAGGTGTTGGAGACCGCCCAGTTGTTCCACCGTTAGTTGAACAgtaaaataatatgaataaatttaGCTGGATTGTTGCATTTTTATGGGGTGGTGCTGAGTATACCGCATATTGTAAAAAAGACAACCTGAgtgtatttaaatctttttcacctTTTTACATTTAGCGTAGCCCATCACGCCAAATAGTGGATGAATTCTTAGGAATGATCTTGTCAGTAACTTttgcaaaatgaataatttttaattattcgagttcaatgatttgtaaatatttcgAACCACTTCGTTTTAGTGAAGTCTACCGACCAGAAAATCTCGGAAAAGTGCGTGATTTCAATACGGCATGTATCCTTAGTGATGCAGCAAGGGCAATATTTTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1RQM2	Phosphoacetylglucosamine mutase OS=Sus scrofa OX=9823 GN=PGM3 PE=1 SV=2
Q9CYR6	Phosphoacetylglucosamine mutase OS=Mus musculus OX=10090 GN=Pgm3 PE=1 SV=1
O95394	Phosphoacetylglucosamine mutase OS=Homo sapiens OX=9606 GN=PGM3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006440 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02878 all species →	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	Domain	Interproscan
PF00408 all species →	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain	Repeat	Interproscan
PF21405 all species →	AMG1_II	Phosphoacetylglucosamine mutase AMG1, domain II	Domain	Interproscan
PF21404 all species →	AMG1_III	Phosphoacetylglucosamine mutase AMG1, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016055 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	Interproscan
IPR016657 all species →	Family	Phosphoacetylglucosamine mutase	Interproscan
IPR036900 all species →	Homologous_superfamily	Alpha-D-phosphohexomutase, C-terminal domain superfamily	Interproscan
IPR005844 all species →	Domain	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	Interproscan
IPR005843 all species →	Domain	Alpha-D-phosphohexomutase, C-terminal	Interproscan
IPR016066 all species →	Conserved_site	Alpha-D-phosphohexomutase, conserved site	Interproscan
IPR049023 all species →	Domain	Phosphoacetylglucosamine mutase AMG1, domain II	Interproscan
IPR049022 all species →	Domain	Phosphoacetylglucosamine mutase AMG1, domain III	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45955 all species →	PHOSPHOACETYLGLUCOSAMINE MUTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016868 all species →	Molecular Function	intramolecular phosphotransferase activity	Interproscan
GO:0004610 all species →	Molecular Function	phosphoacetylglucosamine mutase activity	Interproscan
GO:0006048 all species →	Biological Process	UDP-N-acetylglucosamine biosynthetic process	Interproscan
GO:0071704 all species →	Biological Process	obsolete organic substance metabolic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01836	PGM3; phosphoacetylglucosamine mutase	EC:5.4.2.3	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →