Gene detail

Detailed information of ENSCIQP00000012433.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_012554643.1, E3 ubiquitin-protein ligase BRE1A [Hydra vulgaris]
Species abbreviation MALCI · all data for this species · gene families

Sequence

CDS

ENSCIQT00000014480

ATGAATGTGGCGTGGAATCAGCTTGATGAAGATGTCACCCTGTTGCTTCAAAGATTTGATGATATTCCAGAAGATCTCAGTAAAGGTATGAGTGATTCAACAATCGGCTTCTTAGAGAAGCTGTCAAATCGCACGTCCAAAGGGATGAATGAGGAGATACAGAAGCGAGTTAATTACTCCGGCCAAATAACAAGGAAGCTAATAATGGCAATGGAGAAAGTATTGCAAAGGAGCATGGATTTATCGAAAGTCGTCCACGAGAAAAATGATCAGGTAAAACAgttcaaagcaaacaaaaaacagagACAAAGCGATGGTGCAGTTTCTCCAGATGATGAATATGCGTCGAAACAGGAAGAAACTGCTTTGGACATGACGTCTATAGAGTTGGCCATCAGACAGGATAATGCAGtattgaaaacagaaaacaagcGATTGCACGATTCTTTGAATGGTTGGCATGAGAAGTATCAGTCACTCTCAGCAGAATTTGCAGAAGTGAAAGACAAACTTGCTACAGCACAAAAGGAAAATAGTGAACTTCAAGCTAAACAAGACGACATGCAGTATGACCTTCAGAAAGCTACCAAGCAGTTTGAAAAGCTCATCAAGAAGTTAAACGAAACGCATGTACAGGCGATGAGTGGAGGACAACCCACAACGTCTAAAATACAGGAAAAATGTTCAGATGATGTAAAGCAAGATCTAGAATCAAAGGATGAACTGGCAAAAAATCGTCTGCAGGAGCTGGAGAAACTGCAGGAAGCACACCAGAAGTTAGTTGGTGAGCACGAAAAGTTAAAGCAGCAGATGCATGAAACACCTGATGAGCTGGTCGTTAATACAACCAAGTACAAAATGTTGCAGACGCAATTTAACCTTTTGTTCAATGATGCGCAAACGATACGTAAGAACTGCGAAGAAGCGCGCAAAATTCTCATCAACAACCATACTACACATCTCAGCCAAGTTGAACAGCTAGAGAATGAAAACGCACAAGTGAAGAAGCGTGTCAGAACAGAGGTTAGCCAGCTAGAAAAGGCACTCGGTGATACTCGAAAGGAACTAGAAGTTCTCCGAATCGAGTATGAACATAACATGAAGGCACATGAACAAATAGGACCCATGGCAAAAGAAATGAGGCATCTTATAAATAGCTTACAGaaCCACAACCAGCAACTAAAGGGGGAAGTTCAACGCTATAAAAAACGACTAACTGAAACTGAGACCAAAATTACTGACCTGGAGAAGTCGAGCAAGAATCGTGAAGAAGAAGATACTCCAGTAGATTATATTGAACGTATAGATGTCGGGAATAGGGGAAACACTTCACCGTTGTCAGAAAGCAGTCAGTCTAGCAACGATAGTTCAGACTATGATGATGTTAAAGTTTTGCGAACCAAATTAAAGAGTGCACGGGAAAAACGTaaagaaatgaagattttgttagaTATGTACAAGGGGCTATCAAAAGAAACAAGGGACAAAGCAGAATTTCGTTCCTTGTATCTTCAGTTACTGAAAAACGAAAAGACTTTGAAAGACGAAGTAGAGatcttaaaagcaaaattaataatggtgaCAGACGACGTTGTACGACAAAGCAAAAAATTCGTCGACGAGGATCACAAAAAACAGTGTCGAAAGTTGGAAGCAAAAATCGAAGAGCTCCAGAAACAAATTTCTAATATGAAACAAGAAGAAGATGCTCTGCTTGGTGAAATGGAATTCACAGGACAAGCTTTCGAGGAAATGCAAGAACAAAATATTCGCCTTATGCAACAGTTACGTGAAAAAGATGATGCCAATCTGAAGTTAATGTCCGAGAGAATCAAGTCGACTCAAATTCAAAAACTACTACGCGAAGAGAAAGAATTACTAACTGAGCAAATTTCTACAATGGCAGCGCGCCATAAATCATCGGAAGAGGTTATGAAGAAACTAGATGAGAGGGAAAAAGTACTGCAGTCCTCAGTTTCGGCTATGGAGAAAGAAGGAAGCTTGCGGTTGCAAGCCGCTGAATGTCATAAAAGGAAGGCTATTGAAATAGGAAGTCAGTGTCAAGAACTGGTTTTCAAACAAGAAATTATGAATAAGCAACTGGATGAGCTGAAGAAAAGCGCTGTAGATAAAGCAAGTCGATTGGAAGAAGAAACTTTCAAATATAATCGTATTCAAGAAGAAAATATCAGTCTGAAGAAAAAATTGGATCGAGCAAAGAAAATGGAATATCTTGGAGCTTCGGATGAAATACTAGTCGAAGAAGTGAAAATGTATAAGGGGAAATTAACCTGCCCATGTTGCAATACAAGACCAAAAGATGCCATACTCACAAAATGTTTCCACGTGTTCTGTTTCGAATGTTTGAAAACCAGATATGACACTCGGCAACGTAAATGCCCTAAGTGTAATGCAACCTTTGGTAATAACGATTTCCACAAGATCTACATGTGA

Transcript

ENSCIQT00000014480

GAGGAACTTGACAAAAAAGTGCTACAATTCCAAAATGCTAAGCTTTATGCAAAGTTGGAGGAGAAACATGCTCAAGAAGAGGAATTCAAAGCACGCTTGACCAAGTTGAATAGATTTCGTGACAATGATAGAAACATCATATCTTCCATGAATGTGGCGTGGAATCAGCTTGATGAAGATGTCACCCTGTTGCTTCAAAGATTTGATGATATTCCAGAAGATCTCAGTAAAGGTATGAGTGATTCAACAATCGGCTTCTTAGAGAAGCTGTCAAATCGCACGTCCAAAGGGATGAATGAGGAGATACAGAAGCGAGTTAATTACTCCGGCCAAATAACAAGGAAGCTAATAATGGCAATGGAGAAAGTATTGCAAAGGAGCATGGATTTATCGAAAGTCGTCCACGAGAAAAATGATCAGGTAAAACAgttcaaagcaaacaaaaaacagagACAAAGCGATGGTGCAGTTTCTCCAGATGATGAATATGCGTCGAAACAGGAAGAAACTGCTTTGGACATGACGTCTATAGAGTTGGCCATCAGACAGGATAATGCAGtattgaaaacagaaaacaagcGATTGCACGATTCTTTGAATGGTTGGCATGAGAAGTATCAGTCACTCTCAGCAGAATTTGCAGAAGTGAAAGACAAACTTGCTACAGCACAAAAGGAAAATAGTGAACTTCAAGCTAAACAAGACGACATGCAGTATGACCTTCAGAAAGCTACCAAGCAGTTTGAAAAGCTCATCAAGAAGTTAAACGAAACGCATGTACAGGCGATGAGTGGAGGACAACCCACAACGTCTAAAATACAGGAAAAATGTTCAGATGATGTAAAGCAAGATCTAGAATCAAAGGATGAACTGGCAAAAAATCGTCTGCAGGAGCTGGAGAAACTGCAGGAAGCACACCAGAAGTTAGTTGGTGAGCACGAAAAGTTAAAGCAGCAGATGCATGAAACACCTGATGAGCTGGTCGTTAATACAACCAAGTACAAAATGTTGCAGACGCAATTTAACCTTTTGTTCAATGATGCGCAAACGATACGTAAGAACTGCGAAGAAGCGCGCAAAATTCTCATCAACAACCATACTACACATCTCAGCCAAGTTGAACAGCTAGAGAATGAAAACGCACAAGTGAAGAAGCGTGTCAGAACAGAGGTTAGCCAGCTAGAAAAGGCACTCGGTGATACTCGAAAGGAACTAGAAGTTCTCCGAATCGAGTATGAACATAACATGAAGGCACATGAACAAATAGGACCCATGGCAAAAGAAATGAGGCATCTTATAAATAGCTTACAGaaCCACAACCAGCAACTAAAGGGGGAAGTTCAACGCTATAAAAAACGACTAACTGAAACTGAGACCAAAATTACTGACCTGGAGAAGTCGAGCAAGAATCGTGAAGAAGAAGATACTCCAGTAGATTATATTGAACGTATAGATGTCGGGAATAGGGGAAACACTTCACCGTTGTCAGAAAGCAGTCAGTCTAGCAACGATAGTTCAGACTATGATGATGTTAAAGTTTTGCGAACCAAATTAAAGAGTGCACGGGAAAAACGTaaagaaatgaagattttgttagaTATGTACAAGGGGCTATCAAAAGAAACAAGGGACAAAGCAGAATTTCGTTCCTTGTATCTTCAGTTACTGAAAAACGAAAAGACTTTGAAAGACGAAGTAGAGatcttaaaagcaaaattaataatggtgaCAGACGACGTTGTACGACAAAGCAAAAAATTCGTCGACGAGGATCACAAAAAACAGTGTCGAAAGTTGGAAGCAAAAATCGAAGAGCTCCAGAAACAAATTTCTAATATGAAACAAGAAGAAGATGCTCTGCTTGGTGAAATGGAATTCACAGGACAAGCTTTCGAGGAAATGCAAGAACAAAATATTCGCCTTATGCAACAGTTACGTGAAAAAGATGATGCCAATCTGAAGTTAATGTCCGAGAGAATCAAGTCGACTCAAATTCAAAAACTACTACGCGAAGAGAAAGAATTACTAACTGAGCAAATTTCTACAATGGCAGCGCGCCATAAATCATCGGAAGAGGTTATGAAGAAACTAGATGAGAGGGAAAAAGTACTGCAGTCCTCAGTTTCGGCTATGGAGAAAGAAGGAAGCTTGCGGTTGCAAGCCGCTGAATGTCATAAAAGGAAGGCTATTGAAATAGGAAGTCAGTGTCAAGAACTGGTTTTCAAACAAGAAATTATGAATAAGCAACTGGATGAGCTGAAGAAAAGCGCTGTAGATAAAGCAAGTCGATTGGAAGAAGAAACTTTCAAATATAATCGTATTCAAGAAGAAAATATCAGTCTGAAGAAAAAATTGGATCGAGCAAAGAAAATGGAATATCTTGGAGCTTCGGATGAAATACTAGTCGAAGAAGTGAAAATGTATAAGGGGAAATTAACCTGCCCATGTTGCAATACAAGACCAAAAGATGCCATACTCACAAAATGTTTCCACGTGTTCTGTTTCGAATGTTTGAAAACCAGATATGACACTCGGCAACGTAAATGCCCTAAGTGTAATGCAACCTTTGGTAATAACGATTTCCACAAGATCTACATGTGATTTTAAAGGCTGACTGATGAGCAGACTTGGAGTGTTGAAAATCTCGGGATGTTGTTTCAGGGCAACAGTGAATGACGTACCGGcaatattaagaacattttttggcTAGGGAAGATGTCAACAGCGTTTTATAAAAGCGtcagtaatgaaaatgaaaatattatgatGTAGATATTGAGTATTGCAGatctttttccttcatttttcttCATCTTATTTTATGGACTTCCTTCATTTTTTTAGCTGGCTTTTCTTACCTGTAGAACTTGAACCATCTCAGCGTTACTTTAGGGGCTGATCATTACCTGAAATCAGAGAACTGGTGAAAATTTATTAAGCCAGTGGGgtttattaaataaagttttatgctttttttctttcgaatctctcttcattttttctttaacaacatttCTCCTAAAGCAGTTTTTTCCGCAAAAATCAACTGTGTTTTTCAGAAAGCTACTTTgattttttacagatttatttttataaagcttagctttttaaaataatttaaagaagatGATTGATTACATTGGAATTTCTGAGATTGAGAAAAACAGCGTTTTTTAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5DTM8	E3 ubiquitin-protein ligase BRE1A OS=Mus musculus OX=10090 GN=Rnf20 PE=1 SV=2
Q5VTR2	E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens OX=9606 GN=RNF20 PE=1 SV=2
A2VDP1	E3 ubiquitin-protein ligase BRE1A OS=Bos taurus OX=9913 GN=RNF20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005469 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013956 all species →	Family	E3 ubiquitin ligase Bre1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23163 all species →	RING FINGER PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0033503 all species →	Cellular Component	HULC complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071894 all species →	Biological Process	obsolete histone H2B conserved C-terminal lysine ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10696	BRE1; E3 ubiquitin-protein ligase BRE1	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.