Gene detail

Detailed information of ENSCIQP00000012762.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047128080.1, tudor domain-containing protein 15 isoform X2 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000014881

TATTGATTTGGAGACTGGCCTTGAAAGCACATCGAAATTCAAGGTAATAAAGGAGCATTTAGAGGAGGATAAAGCAAGTGATACTATAAGCGTCTCGTCATCAAGAGCTGCCCAACGTGCTCTTATTCTGGAAGATCTAGCAGATACCGTCCTAGCATCATTAAGaATGGATCAAGAGCAAGATACAGGCTTCTCAGACTGGGACCCAATGAAAGCTTCGTATGAacaaaagcattttaataccTACTCAAAAGCACAGTATGATGCAAATTTTACAGAGAAGCATGCTGCAGTAAGAGGATCAATTTCTCCAGCTAAGGGTGACGCAGAAGAAGTCAGGCTGTTTGTGGCGAATATACCTTTAACACTGACAGAGgatggaatgatgaatttattttcgcAAGTAGGTAAATGTAAAGACGTGAAGCGATGTAGCCCGAAGGGAAATTCCAGTACAACATATGGGTTTGTAACGTACAACACTGTACACGAAGCTGAGAGAGCCATCATAAAGTTCAGTGGATTCAAGTTTGGAGGAAAATACACATTGAGAGTGAGCCTAGCAAGGAACTCGAGGAATAACACGTCATTTGGAGGAGTAGAACAGATATGGAGAACTCCAGGCACAAGCGACGGAGAAAATAGTTTTGATAACCAATCAAAAACATCAAGCGGTGCCCAAGAAGTGTCAAGTATACTTCAAACTCCATTGGAAAAGCCGAGGTTATATGTCCATGCCTTAACGGTAGATACAACTCCAgAAGAGCTCAAATCTTTATTTCAATCCGTGGGAACACCAACAGATCCGGTTATAGTACCTCCAACAAAGCCTAGACAATTTACTACATATGGTCCATTTGAAGATGACGAGCTTCAAGAGACCGGAGAAGTggagaaaaatacaaataaagaaCAATTGTCTCCAAAAATTCAAACGACTATGACACCTGAAATAAAAGAATCTGTCAAATCGCCTGGTGGTAAGTGCAATGTGATGAAAAAGgaaaatttgcaatttgcaaggaatatcaatttttagaaacatttcaaaatgacCTAGATAATTTCGAGCGCAATTTTCAATACTTATGGACTGGACATTAAAGTCTTGGTTATTGTTACtaatatttactattgtttatAACGATTAAAGCTAACATATACATCTTATACAATAATTAGTGATGGAGgtgtttttattagaaaaataataataccagTTCTAAATAATATTAGTTGGTACCGTGATTCATAAATTAGGATAGCTTCATCTTATTAGATTAAATTTACACCATCGCTTGTACCGTAAAACAAACTGATGAGAGTGTTTGGTTTATATCTATAGTAGCTGTTTCTTCACACGGTATTGATGTGTTGCtttgattcatctttttttccctataataaaaatttacacatAAACGTAAAACAATTTACAATAATCCCCCTGTATATTACAAATTATTATACCTTCGAAAactaaaacataatttaaagtaatttagtagataatatAAAAGATTTCTGTTAAACAGAAGATAGATTTTAAGTTGATTCTTGAAAGCCTTTTGTGTcccttttaaaaagtaaatatagaatcaaatgtttttgtagATGTTATATAGTTTATTGTCGTATTTAAAATATTCGTGTTTGAAGAGTCATCGAAATAGGAGAATGTTGTTAATAAAAGAGTCATGTTGTtccaaatattagaaaagatatacTTTATGTTGTCCAAAAGGGTTTCCTTTCATGGAAGTAGTTGCGATAGAGAAGCAGATAATGAACAGTTTCAACTTAACACGGCAGAGATTGAGACAGCCTTTGGTTGAACTATGTTTGAACTTACGATCTCTTAGATAACTTAAACCAAGTCGCAATCTCATAATCAGTTTTACTCCTTTACAAGTTAAAGGAAGAATTTCAGACCAGTTTTTTCATCACATAGATACCAGTCAATTATATTCAGTCAGATTCAGTTGAATCTGACTGAATGATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q39061	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003584 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502 all species →	Family	Eukaryotic RNA-binding	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025 all species →	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000012762.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.