Gene detail

Detailed information of ENSCIQP00000014548.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_026949301.1, pseudouridylate synthase 7 homolog-like protein isoform X5 [Lagenorhynchus obliquidens]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08647	Multisubstrate pseudouridine synthase 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PUS7 PE=1 SV=1
Q17426	Putative pseudouridine synthase B0024.11 OS=Caenorhabditis elegans OX=6239 GN=B0024.11 PE=3 SV=1
A6USB0	Probable tRNA pseudouridine synthase D OS=Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB) OX=406327 GN=truD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001686 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01142 all species →	TruD	tRNA pseudouridine synthase D (TruD)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042214 all species →	Homologous_superfamily	Pseudouridine synthase, TruD, catalytic domain	Interproscan
IPR001656 all species →	Family	Pseudouridine synthase, TruD	Interproscan
IPR011760 all species →	Domain	Pseudouridine synthase, TruD, insertion domain	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13326 all species →	TRNA PSEUDOURIDINE SYNTHASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06176	truD, PUS7; tRNA pseudouridine13 synthase	EC:5.4.99.27	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.