Gene detail

Detailed information of ENSCIQP00000017785.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047133145.1, RNA-binding protein 4.1-like isoform X3 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000020747

GTGAAGTCAGGCTGCCATCTGCAGGAGCTGGAACTGTAGAAGAATAGCTGGAAAATGAGTGACAAGAAAGACATCAATGACACAACTGTAAAGCTCTACATCGGCGGAATAGATCCCGATTGGTCCAGTGAcaagataaaagatattttggCTAAACATGGGGATGTAATTCGGGTTGATGTTgtcaaaaactttgcttttgcaTTTGTGAAAACTCAAACGGATGCAGATAACATTATCAAAGAAGTAAACAACAAGGTTTGTGATAGTAGGAAGCTTCACATTCAGatttcaaaGAACAAACAGAATCTACCGGATTGCGATGATCTTTGTTTTGAGTGTGGGAAAGGAGGACATTGGGCCAAAGAATGCACGCAAAGAAGGGCGAGGATGCAAGAATCAGCTGTGAAGAGAGGACGCGGAGGGGCAACAACAGCAAGGGTTCCCCCAAGTAGAGATATATATGGCCGTGCATATCCGCCAGACCCTTATGCACGTGAAAGGGACCCCTATGCAAGAGAACTACCCCCAAGAGCTTATCCAAGGGACCCTTACGCCAGATATGACCCATACGATGATCCGCGTGACCTTTATCGTCGTGATCTGTATGCTCGTGATCCTTATGCACGTGACGCATACGCTCGTGATCCATATGCTCGCGATCCATATTATAGAGATCTATATGCACGTGACCCTTACTATGCGCGTGATCCATACTATGAGAGATACCTTAGAGAACGTAGTCCACCACCAACAGCAACCTACGATTACAGTAGAAAGAGCCCTCCCCCAGCAAGATCATATACCCGTGAAGCTGACCCATACGCAGCAAACCGAGAAAGATTAGCGTACGGACGCAGTTACACTGATCCACTGGCACCACCGACCTCGGCAAGTAGCAGGATTTTAGATCCATATGAAACTGCCCGTCGAATTGTTTCAACATATGATAGCGTAAGTAAGGCAGCTGACCCGTATTATTCCGATCCACGACGTGCGGATCCATACAGTACCGCTGCAAGGGATACCGCTGGTTACAGTGCATATGAAACTAGTGCTGCAAGTGCAGCTGGTAGAACAGGCGATTCAGTCCGACCAGTCGATCCATATGATTTGAAAACCTCACAGGACAGATATGCTACGGTTGACACTGCAGCAAAAAGATATCCGGAACCTACACCAGCTCCGCGACCAAGACCAGAGTATGCTTGAAGCGAGTTTATCCGAGCTAAATTGCAGCGGCAATATTGACGAAACGGATGCTGCTGCAACGGATATCGTATGATAAACGGACGTTCGCATGGATATTAACGGATTTCGGAATAATGCTAAAGGGACATGATAAAACTTAAATACGCGATAGCaggaacattttaaattttaaatatcatttaGCCACTTTTAGAATTTTCCCTTGTAGAAAAATACCTCGATCGTATTAGTCATTTTTTCCGTTGATATAATCTCGTGAAGAAATTGTTTTATCGATCTTACTCAACTTCCGCGTTTTTTACTTTCGGATATTGTCTGTTTATATAAACTTAGCGCGTTTTACAATCATGAGCGAGTAAACtgaagaaaaccaaaggtttctcAGGTAAAACTACAATCATAATGACGAACCATTGAAAACAGCTTTAGGCAATCCTCAAGGGAATACTGCATGCAAAAAGACATtcgatgaaaatgaattaaagaagCCTGTATCAGTGAGAAAGCTAGTCAAAGAAGGAATATTTATCTGAAAGTAAACATGAAATAAATACTCCGAAGTTTTGCGGTTCGTGGCAATTCTTAGTTCTTCAGTTAACCAACAATCACATAAATTGCCACCAGAAAACTGTTTTTGAGAAATTGATAATTAACTGAGTTCTTTCAAGGTATGCTATTTCAGAATTGCTCTTTCAAGGTATGCTCTAAATATTTAAGATACGATTTATCCACGGTTGAACGCATTCCCTCCCttatttaaactaatcaattTCGTTCGGATATTTTAGATTTCTCCATGCTTCTACCTGTATGCGTGAATTTTATTAGACTTTAGGACTGAATTTTTATGTAGGTGGGTTTAAAATTCCCCAGGTTTTCATATTCCTTCCCATTTTTATTAATCAGATAATTGCGTTACATTTGgaagttcacaaaaatttgaaaggtCACATTTGGGAAGTAATTTGaccattttggaatattttatcaAGAGAAAAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002199 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13187	RBM4; RNA-binding protein 4	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.