Detailed information of ENSCIQP00000017868.1 in Millepora alcicornis

Genomic Location: chr6:39257980...39265873
NR annotation: XP_047132272.1, zinc transporter ZIP9-like [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A3Q7ZPG5Zinc transporter ZIP9 OS=Micropogonias undulatus OX=29154 GN=slc39a9 PE=1 SV=1
Q9NUM3Zinc transporter ZIP9 OS=Homo sapiens OX=9606 GN=SLC39A9 PE=1 SV=2
Q6NRM1Zinc transporter ZIP9-B OS=Xenopus laevis OX=8355 GN=slc39a9-b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005770 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02535
all species →		ZipZIP Zinc transporterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045891
all species →		FamilyZinc transporter ZIP9Interproscan
IPR003689
all species →		FamilyZinc/iron permeaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16133
all species →		SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006829
all species →		Biological Processzinc ion transportInterproscan
GO:0046873
all species →		Molecular Functionmetal ion transmembrane transporter activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0030001
all species →		Biological Processmetal ion transportInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSCIQP00000017868.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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