Genomic Location: chr5:65353709...65368293
NR annotation: XP_002163037.3, probable transcriptional regulatory protein Nther_1800 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families
| CDS |
| ENSCIQT00000021384 |
| Transcript |
| ENSCIQT00000021384 |
| Protein |
| ENSCIQP00000018355.1 |
| UniProt accession | Description |
|---|---|
| B2A5L8 | Probable transcriptional regulatory protein Nther_1800 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=Nther_1800 PE=3 SV=1 |
| B8CXG6 | Probable transcriptional regulatory protein Hore_12350 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) OX=373903 GN=Hore_12350 PE=3 SV=1 |
| B5YFL4 | Probable transcriptional regulatory protein DICTH_1505 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=DICTH_1505 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004866 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01709 all species → | Transcrip_reg | TACO1/YebC second and third domain | Family | Interproscan |
| PF20772 all species → | TACO1_YebC_N | TACO1/YebC protein N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026564 all species → | Homologous_superfamily | Transcriptional regulator TACO1-like, domain 3 | Interproscan |
| IPR029072 all species → | Homologous_superfamily | YebC-like | Interproscan |
| IPR002876 all species → | Family | Transcriptional regulator TACO1-like | Interproscan |
| IPR048300 all species → | Domain | TACO1/YebC-like, second and third domains | Interproscan |
| IPR017856 all species → | Homologous_superfamily | Integrase-like, N-terminal | Interproscan |
| IPR049083 all species → | Domain | TACO1/YebC-like, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12532 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
ENSCIQP00000018355.1.Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
