Gene detail

Detailed information of ENSCIQP00000018591.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047130415.1, vacuolar protein sorting-associated protein 13D isoform X2 [Hydra vulgaris]
Species abbreviation MALCI · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000021653

GTTGTTGTATCTTTGGCTGGTGGATTTGGAGTGTCTTTTATAAATTTACGCCCTgaagaacttttatttttctcattgaATCAGATTCTTTTCCAGTCAAAATTCAGCAAATGTTTTCACAGTATTGATCTTGAAGTTGGTTCCATACAAATCGATAACCAGTTGTTTGGTTGTGAGGTGCCTGTCACAATCTATCCCTCTCCACAAGCGAAGAAGATAAGCCAAGGCAGCAGTATGGGTAATAATAATTTGCAAATCAGCGTGAGAACTGAGCGAGATTCAGACTTCGACTTCTTGGTTTTCAAGaatgTGGCTACTGATATATGTAGACTGAATATCGAGCTAGAAGATCGTCTTGTGTTAAAGTTGATCCAGGCAATCCAAGAAATAGTAGCAGGTGAACCAAAGGATGCTAAGGACACAGAAGAACCTGTAAATGTATTCGATACTCATAAAATCGACTTGAAGCCCTCTATTGACGTGAAAGATAAactgttttttgaagattttatcttTAATCAGGGTGAATTGAAGATAAGTTTATTGACAACGGGGAAAATCGATGAAGATTTGGTTCCAATTAAGAAAAGCATAGGGATCCCATTCATTAGTTTTCAAGATGCCGCAATTAGTTTTGATCGTTATCAACGTTTAAATCTTTTGGAAACCAAATATGGCATGTTGCAAAACATCTTACAGTTTTATAAAGAAACATTTACTAACCAAGCTGCTTCATTGTTGGGATCGCTTGATATTCTTGGTAATCCAGTGGGATTCATACAGGATCTTTCATCTGGTGTTGAGGGACTTTTGAAGAAAGGAAATATTGGTGGATTGTTCTTTAATGTTGCCCATGGCTTTTCTGACAGTGCAGCaaagGTCACGGGATCAATTGCCAATGGATTATGGTCTGCTTCAATGGACAATAAATTCCAAGAATCACGTGATTCATTGCGGGTATCACGTGCGAGCAGTAGTGGTTCCCATTTTTCTGCTGGTTTGAAAGGGCTCGGCATGGGAGTAATTGGAGGATTGACATCAATGGTTACCCAACCAATAGAGGGTGCTTCCAGGAAGGGTGTGTCCGGATTTTTAACTGGCCTTGGGAAAGGCCTGGTGGGAACAGTTGCAAAACCTGTAGCGGGAGTGTTGGATTTAGCCTCAGGCACTGCAGCAGCAGTGAGGATGTCAACGGAGACTACTTATCCCAAACCCAAACCTATCCGTCTAAAAAGAAACTGCTATGGACCAGGTGGGGTCTTGGGGAAATACTCGAGAACTCAGGCGGAAGGTCAAGAAATTCTTATGAAGTTTAATGAAGGCAGTACTGAAGAAATGTTTGTATCAATGGAAACAGTTAGACCGAGTAGTGACCGACTGAAAGTGATTTTAACGAACATAGGCGTCTACTTCGTAAAATCAGGGCCGCCATGCGCTGAAAACATCAAACTGCACGTAGAATATTCTAGAATGTTGGATTCTTCGTACTATTTCGAAgATGGTGTTCATttcattgaaatgtttttatgTCGTCGTCAAGACTATAGTGTTCAGGAGTATAACCTTGATAACAGGGCGGCCGTCAGATGTGAAAGTGAACGCATAGTGTACAAGATTGTTCAGAGGATCAACTATTTAAAGAGTTTGTACGAAGAAAGCTTATTTGCATTGCATGAGAAGTTATGCTAAGGAGTGGTATCTCTAGTTGCGCCCTATGGAAAACAATTGATGGAATTACCGTAATAAGCTTCCTGGCAACGCTAggtttgaaaagaattttaatcaGTTCATCGATCTTGTTTTTGTcgatttcaaaacatttttgtctggaggtaaaatattatttaaatggtACCGCGCTTTAGTTAGTGCAAGTAGATCCACCTACGTTTTGTTCTTGCTCAAGTTTTTATATtacctattttattttattattttactattttattttctattaccGATTCTCAGGAGTAAGCAAGGTGACttattttagtaactttacatatgaaaaaaacattcatgaaattattttatcgttttatttaaaagaaagtgGTGTTCATAAATATTAAAGCAACGAGTATTTAGCCCTGTAGTGCCTGATGTCCCctaaaaaaggtcatacatacttaaacaaaaatgcagctttcagccgtaggtttttttaagtatgtaaagaccttttagtggataccaaaCATTAAAGGATTAATGGTGTGAACATTGAGAGAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5THJ4	Intermembrane lipid transfer protein VPS13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2
Q9VU08	Intermembrane lipid transfer protein Vps13D OS=Drosophila melanogaster OX=7227 GN=Vps13D PE=1 SV=3
Q96RL7	Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21679 all species →	VPS13_C	Intermembrane lipid transfer protein VPS13, C-terminal	Domain	Interproscan
PF16909 all species →	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR049424 all species →	Domain	Intermembrane lipid transfer protein VPS13, C-terminal	Interproscan
IPR031645 all species →	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000018591.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.