Genomic Location: chr5:206441683...206460267
NR annotation: XP_047136864.1, signal transducer and activator of transcription 5B [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families
| CDS |
| ENSCIQT00000022870 |
| Transcript |
| ENSCIQT00000022870 |
| Protein |
| ENSCIQP00000019595.1 |
| UniProt accession | Description |
|---|---|
| P42229 | Signal transducer and activator of transcription 5A OS=Homo sapiens OX=9606 GN=STAT5A PE=1 SV=1 |
| Q9TUM3 | Signal transducer and activator of transcription 5B OS=Bos taurus OX=9913 GN=STAT5B PE=2 SV=2 |
| Q9TUZ1 | Signal transducer and activator of transcription 5A OS=Sus scrofa OX=9823 GN=STAT5A PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0067748 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00017 all species → | SH2 | SH2 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001217 all species → | Family | Transcription factor STAT | Interproscan |
| IPR036860 all species → | Homologous_superfamily | SH2 domain superfamily | Interproscan |
| IPR000980 all species → | Domain | SH2 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11801 all species → | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0006952 all species → | Biological Process | defense response | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0007259 all species → | Biological Process | cell surface receptor signaling pathway via JAK-STAT | Interproscan |
| GO:0042127 all species → | Biological Process | regulation of cell population proliferation | Interproscan |
ENSCIQP00000019595.1.Genes whose expression across the transcriptome samples of Millepora alcicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Millepora alcicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
