Detailed information of ENSCIQP00000019753.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: EDO34165.1, predicted protein, partial [Nematostella vectensis]
Species Millepora alcicornis · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
Q7SIB2Collagen alpha-1(IV) chain OS=Bos taurus OX=9913 GN=COL4A1 PE=1 SV=2
P27393Collagen alpha-2(IV) chain OS=Ascaris suum OX=6253 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001899 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01413
all species →		C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050149
all species →		FamilyCollagen superfamilyInterproscan
IPR036954
all species →		Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR001442
all species →		DomainCollagen IV, non-collagenousInterproscan
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005604
all species →		Cellular Componentbasement membraneInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0030020
all species →		Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198
all species →		Biological Processextracellular matrix organizationInterproscan
GO:0031012
all species →		Cellular Componentextracellular matrixInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005201
all species →		Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581
all species →		Cellular Componentcollagen trimerInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSCIQP00000019753.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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