Gene detail

Detailed information of ENSCIQP00000020517.1 in Millepora alcicornis

Genomic Location: :...
NR annotation: XP_047133052.1, ribosome quality control complex subunit NEMF [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSCIQT00000023966

AACCAGCAAACGTGTGTAAATGTGGAAATAGATTTAGCAATGACAGCTTTTGCAAATGCGAGAAGCTATCATAACAAAAGACGGTTCGCTGCATCCAAGGAACAGAAGACTATACAAGCTTCTAAAAAGGTTTCAAAAACTGCACCGAGTGGAGAATACCTAACTACCGGGAGTTTTATGATTCGGGGTAAGAAGAATTATCTACCCCCATCTTATTTGGTAATGGGTTTTTCAGTCTTATTCAAGTTGGACGAGGCGTGCGTGGAGAGTCATAAAAATGATAGGAGAGTGAAAATCATAGAAGATGGTACTAGTAGTGAAATAACAGAAAATGAGGAGGAAATTAAACTTGATGAAAtcgaagaatttgaaaaaaaattagagacaaGCTATAATGCcaacgaaaatgaaaatggtttggaaataaaaaaagactttaaaggtGATATAAATCTTGATAATGTCAAGGCTCCAAAACGTAGAGAAGAcactagtaaaaatattgaaattgactcCGGACAGTCCAGAGACGAAGATAAATTTCACCATTCGTTGGAAAATGAGAGTGGCAGTAAGAAACAAGTAGATATAGACTctgatattgaagaaaaaaaattgaatactgACATTAAAACAGAAAGCACCCTTCACAGTTCACGTGATTCCAGTGGAAATAATATAGATAGCACAAAAGACAGTGAGGCAAATGGAGATGAGGATTATTACCCAGATACCAATATACAGTTACAGCACGTTGCAGGCGGAGAATTCCAGTTGCAGCGTAGTGTATCATCAACATCTTCAAGAACTAAGGAAGAAATTGAGGGCGAGGATTTCGTATATCTTGGAGATGGAGAGAAAGTTTACACAACCAAACAAGAACCAACAaacagaaaatcaaaattgtcagcaAAGCAAAAAAGagatctaaaaaaaaagaagaaacaaatcaGTGAAAAGGATATTGGAAATGAAAGTGATAAAGTCGAAGCCGACTCACATAATGATGCTTTAAAAACGTCAGATAAAACTAACTCTTCAGGAACGAAACAAGCAGCACCACTTCCATTAAAACGAGGACAAAAGAGCAAACAAAGACgtatgaaagaaaaatacaagGATCAAGACGAAGAAGATAGGGAACTGATGCAGCAAATATTGCGAGCAAACGAGCCCGAAAAACCACCAAAGAAGAAAGGGAAAGAAAAGCagaaagaaaaacagcaaaataaacaaCCCAACAggcaaaaaattaataaaaataagatcaGTACTCCAGAAATCTTGCATAGCCCAGATGTTACTCCGCCAGATCATAAGCCACAAGGAAATATAGACGAAGATAATGATGACATCACTGAGGATGCTGACAAGGAAAACATATCAGTCGTTGATTCACTCACAGGATGTCCGCTTCTGTCAGACCTTTTGTTATACGCTATTCCAGTTTGTGCTCCCTACAGTTGTATGCAGAACTATAAatttaaagTGAAAATTACACCTGGATCAGGAAAACGAGGAAAAGCTGCAAAAACAGCGCTGCATATGTTTCAAATGGCAAAAGAGGTTACAAACTGGGAAAGagatttaatgaaatgtttaaaggatGTTGATATTTCGAGAAATATACCAGGAAAAGTGAAAGTTTACGCCCCAAATTTACAAAgattgaaaaagaagtaaaaaatatatacctttACTCTTcggtgcctaattgtagggggtggggggctcaaattgcaaatttttggaaaaaaaatcaccGCAagttcatttacttattttaattattataagagaatgacctaaaaatcctcctcctcccattttaagaaatcttgataattcccccctagtgcattttattcgaccccccgcTACAATTAATCACGGAAgagtaacccatttcatgccactgttctctatatataccccctgaaaacataaaaaaaacctctagtttctgttttcagggggtaacgACAGAAAGCAATGGCATCCACTTGGTTAATGCAGCTACAATAGAGGAATTACGCAAGTGAATGTAACAGTTATTTTTACACGAccaattatttatatttacaaaatcaatttgTGTATTTCTTATACAGATACATACAGCAACATTTCTATAGGTAATCCATCATCTACCCTTCGAAAGAGTGAAATTAAACTGGGCTACCAACGGCcacgtttttaaaaagttaccagatattttattggatattttaCGGTATTTTGTAAGGATATTTGACTAAAGGTAATAGTAAAGCTAATTAGTTTTGTCAGCGGAGTTGAAGACCTTA

Protein

Uniprot

Uniprot term	Description
Q8CCP0	Ribosome quality control complex subunit NEMF OS=Mus musculus OX=10090 GN=Nemf PE=1 SV=2
O60524	Ribosome quality control complex subunit NEMF OS=Homo sapiens OX=9606 GN=NEMF PE=1 SV=4
Q9VBX1	Ribosome quality control complex subunit NEMF homolog OS=Drosophila melanogaster OX=7227 GN=Clbn PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11923	NFACT-C	NFACT protein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021846	Domain	NFACT protein, C-terminal	Interproscan
IPR051608	Family	Ribosome Quality Control Complex Subunit NEMF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15239	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan