Gene detail

Detailed information of ENSCIQP00000021685.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_002154561.4, nibrin [Hydra vulgaris]
Species abbreviation MALCI · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000025353

GATGGACCTAATAAAGTTACAGTTACTGATACCTCGAAAGTTGGCGTCCATGTAAATAAGAGTAAAATTGAGtccaaaaaagaaatagaaatcagCAGCTCTGATATCattagttttgggaaagttttcaAGTTAAAGTGGTAGGTGTTTGAGCGAATGGAATAATAACGTCACACATTTGATCATGCAGCAGGTGACGTTTACAATTAAAgtAGTATGTGCTTTAGCAAGTGGGACGCCCATAGtgttggtaaaatattttgaagatttgttGGACTGTTGCGATAAAAAGAATGTGAACAAATTACCACTTGAAACTGATTATCTTCCACCAATTGAAGAGCCAACACTTCAAGGAAAAGAATGTTTGCTACAGATAAACGAGGAAAGGAAGTCATTGTTGATCGGAAAGGAGTTCGTTTCGTTACATGCAAAACAATACAAACGTGTAAAACATGCAATTGAATTAGCTGGGGGTTCAATCACTCTTAATGATCAGAAGAACAGTAAGATGTTCAAGAAAATATCAACCAATCAGATTCTGATCCTGTTTATTGAAAGTAAAGAAGAGAAACAAGTAAATGAAGAACAGAAAAATTGGATAAGTTCAGTATacgaaaaagtcaaaaaATCAAATCTTCGCTCCATTCGAGAATCAGAAATTGGATTAGCGattttaaacaattccatacaaGAGTTTTGCAATCCAACCACTAAAACAGCACCATCTTTAACGAATACCTCGCATTCGCAAGTTCTTCAAGATACACTTGTAGCAGAAACCCAATCTTTTTCCCAGTCTCAAAGAAGTCAGTTCAAAGTTCCAGAGACTATTGATATTACAAtgTCGGAAACTGCTGGCCAAAATGAAGAGGGAAATTACATTAAGAAAAGGAAACGACGTTTAGAATCACCAAATCGACAAGGCAAATCgaaattgataaaaactgaagaaattaaaattgaagatgctGAAGAAGCCTTACTTACGAGTTTAATTGAAGAAGATGTATTTGATGCAGTACCATCTAttgaaatacctaaaacaaaaaaacccgCTAAGCTAGCTCAATCAAAAGTTGACAACTCAGATAAAGAGCCCagtgaatttttatcaaatacttcaACTGTTTATGATAAACCACAAAATTCGTTATTTGTCAACGATACTATACTTACTTCTAATATTCAAACTAAACTAAACCCTTCAACTAATGTATCTAATAAAAAAGTCGTTCAAGATACATGTCCtatatttgataatgataataacaatgataatgataatccaTTTGATTTTGATGTTCCAGAGTTTTCAACTTCGTCTTCAAGTATTTCGAAAGTAGTTCAAAAGGTAGTCTCTGACAGTCAAGGAGAACTACCAAATAGTTTATATATcgatgaaataaataacattaacaatGGTTTGAAAAGTGAAGATAAATCAAATGAtagttttgatgatatgattgaaaataatgtcaaattgGGAGAAAACAAGGAAAATAGTCCTTCGCAAAGGTTCATTAAAGCCTCTCATGACACACAGGACTTTTGTCTAGAAGAAATAGTACTATCAGATGGCGAAGAGTTGATTTCAAACTGTGATAAAAGTGATGACGAAATAAATTCTAATCAAGTGAATAATCAGTCAAATGATAGGTGTTTGTCTTTGGATAATGGCGACTTGATGGTTAGCGAGGAGTTTTTACCTAACGCGAAAACGAAAGTGAAAATTTCATCGGATGGATTTATTTCAGTCAAAAATAAGAAGTCTACAATGCCAGCAAAACTGGATCCAGATTTGGACGACATTCCTGATGATCTCATTCAAACAGAATGCGTTACCTTAGTAAAGAAAAATCAGCAACTAACGAAACAACAAAgaaataatctaaataaaaaaaacgtaaaaaatttcaaatgttttcgaaAGCAACTATATGCAGGCCGCTCTAGCAAACGAATTCACAGAAATGACCTAGTCGTGTATGAAAGTAGGAATCAACAACGTGACGCCCTGTTTGATGAATTTATAGAGGAGATGGAGGAAGAGGAAGAAGAGGAAAGGAATGCTGATCAACTTTTCAATTGGCAAAGTATGGACGATTAATGTTGTTGAAAATCTAAAGGATATATGGAGGGATAACGTAAGAAGATATAACAATGtagatattattattgttaaatacatctatcaaaaaatgaaagcatGCTCTATTTTTGTGTTACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RCV3	Nibrin OS=Pongo abelii OX=9601 GN=NBN PE=2 SV=2
Q9DE07	Nibrin OS=Gallus gallus OX=9031 GN=NBN PE=1 SV=1
O60934	Nibrin OS=Homo sapiens OX=9606 GN=NBN PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004963 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16508 all species →	NIBRIN_BRCT_II	Second BRCT domain on Nijmegen syndrome breakage protein	Domain	Interproscan
PF08599 all species →	Nbs1_C	DNA damage repair protein Nbs1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013908 all species →	Domain	Nibrin, C-terminal	Interproscan
IPR032429 all species →	Domain	Nibrin, second BRCT domain	Interproscan
IPR043014 all species →	Homologous_superfamily	Nibrin, second BRCT domain superfamily	Interproscan
IPR040227 all species →	Family	Nibrin-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12162 all species →	NIBRIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000021685.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.