Gene detail

Detailed information of ENSCIQP00000021764.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_002162244.3, lissencephaly-1 homolog [Hydra vulgaris]
Species abbreviation MALCI · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000025451

tttagatttgcaATGGCTTAGTGGCCATTGTAAGATgaatataacataaaaatatcagaaaatgataTTGGCAGGCTTTAATTGGGAGAGAAAACGAACTGATGAATAAAAACATGGTTTTGTCTAGCAAGCAAAAAGAGGAATTAAACAAAGCCATAGCTGATTACCTTGAACAATGTGGTTTTTCACAAACGCTTGAGCGATTCAAAGAAGAGGCAAATATTaGAGGAGATTTAGAGAAAAAGTATGCGAACTTACTTGAAAAGAAATGGACATCAGTCGTCCGGCTTCAAAGAAAGGTTATGGAACTTGAGTCCAGACTATCAGAAGCTGAAAAAGAGCTAGAAACTGGAGGCCCCTCCAAACGTAATCGAACAGCAGAAGACTGGATTCCACGAGCACCTGAAAAGTACACTTTAAGTGGTCATCGTAGCCCTGTAACTAGAGTTTTATTTCATCCTGTATATAGtgtAATGTTAACGTCTTCAGAAGATGCCACAATTAAAGTTTGGGATTATGAGACAGGTGATTACGAGCGAACATTAAAAGGACACACAGACGCGGTGCAAGATCTCTCATTTGACAATCAAGGGAAACATCTTGCGTCGTGCTCAGCAGATATGACGATAAAAATATGGGACTTTCAAACATATGAATGCATGAAAACACTTCACGGTCATGACCACAATATATCATCGGTATCGTTCATGCCATCTGGAGACCATCTAATCAGTGCATCACGtgataaaactatcaaaatgtggGAAGTAGCATCAGGATACTGCATTAAAACTTTTACTGGTCATCGAGAATGGGTGCGTTCAGTTAAAGTTAGTCCGGATGgttcGTTAATTGCAAGTTGTTCAAATGACCAGACTGTACGAATATGGGCAATAGGAACCAAGGAGTGTAAAGGGGAATTAACAGATCATGAACATGTAATTGAATGTATAGCCTGGGCTCCTGAAAAGAGTTATCAAGTTATTAATGAGGCTACCGGAAACGATaaaaagaatgcTTTGCCTGGGCCATTCTTGGCATCAGGGTCAAGAGATAAATCCATAAAAGTATGGGACATCAACACTGGAATGTGTTTATTTACATTGATCGGACACGACAACTGGGTGCGTGGTTTACAATTTCATCCTGGTGGTAAATTTTTGATTAGTTGTTCAGACGATAAAACTCTACGTGCATGGGATATCAAAAACCAACGATGCGCGAAAACATTAGTTGTTCATGAACATTTTTGTACGACGTTTGatttcCATAGAAATTCACCCGTAGTAATTACTGGCAGTGTAGATTTAACAGCGAAAATATGGGACTGTCGTTGACCTTTACTACcttattatataataaaaagattcttgtTGGAGATAAATCAAGAGCCAGTAGTAATACTCAAATTTGTTAAAGAGACGGATATTTTCATTTATGTGAGATTATGGAGGTAACAGTAACGCTGTCCACCTATCAATGCTGGATGGAACAGGCTAAATTTGGTTGCTAAGTCAGTAATATAAACTGTCCTCGCGTGAAGTAGCGTTTTCATTCAGGTGTGTCCGATATACTTCACGCAAAGTTACTCTTTTCAGCGACACGATTGGTTTTCCACAATATTTCTGGAAATCTGGTTGGTCAGGGAATGGCAAAATCAAATGGTTTCTGAAAAGAGTGACTTTTCTGGAACTATTCTTCAGTAACCATAAGTGGGGACGTTACTTTAGACTACCAGTAGTGAACATCAtggaattattattatatatatatgaataaaaaatgtgaGTGAAATTGTTTTGGTTTCACTTGAAGAAAGAAATGTTTGAGAaattatagttttcttttatatttctgattttagtatttgtttttggtaatcaattgtcaaacaaaaatttgttcaaaatagcAAACAAGACGCCGGTCAGGTTTTGAACGACCGCGTTTCCAATGCTCCAGTTGCTACTTTGACAAGTTCTATTTCCACCTTGTAAAGAAAGAACGGTATGGTAAAATTAAGTATAGGGATTTCAGCTCAATTAACCTCACCTatgtttaacataattttgtTCACTAGTCATATTTTTTCGAATTAACCTATTGGCGTGTAGTTTACGATATGTCGAATAAAAATTAGCAAGAAAACTTGTATTATAAAATCGCGAACGATATTCAATTATATtgaacttttttagtttcttgtCTTATTTTACTTATTAGTTTCAAGTATTGCTGTTTTTAATGTATAGCAATTAAAGGAGAATGTCTTGCGatagaaaatatgttttcatagcGTTCAATGTTTTCAATGTATAGCAATCATTGAAAATGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S338	Lissencephaly-1 homolog OS=Nematostella vectensis OX=45351 GN=v1g242515 PE=3 SV=1
Q6NZH4	Lissencephaly-1 homolog OS=Xenopus tropicalis OX=8364 GN=pafah1b1 PE=2 SV=3
Q90ZL4	Lissencephaly-1 homolog OS=Xenopus laevis OX=8355 GN=pafah1b1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006968 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08513 all species →	LisH	LisH	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR017252 all species →	Family	Dynein regulator LIS1	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR037190 all species →	Homologous_superfamily	LIS1, N-terminal	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16794	PAFAH1B1, LIS1; platelet-activating factor acetylhydrolase IB subunit alpha	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.