Gene detail

Detailed information of ENSCIQP00000021869.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047129940.1, E3 SUMO-protein ligase RanBP2-like [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

ENSCIQT00000025575

ATCATCACATACGAAAGTAAACCATCTTTTGCACAGAAAATTAAGGCTTCACGTTTGCAACTTCCACAGACGTTTTATCTATACGAAACAAAACAACCATGCCCAGGTCGCAGAGGTTGCGTTGACAACTATCACCAAGAAATTATATCAAAGCCAGAGGGGCAAGTTCAGCAGCGAAATCAAGAAGAGGTTACGGCGAATTCGAAAACTAGTGAAGTCTCTTTAGAACCAGTGTTTGGAGCAAAAAGCTCCACGTTAAGCTCATTTGCTGCCCTATCTTCAAACAATACTGGTACATCTGGATTCACAGGGGGTAGTGGACCGTTTTCTGGAGCAGGAGCAGCTTTATTCGgcgaaaaagaagaagaaggttACAATGAAGACAATTATGATCCACACTACGAAGCCATTGTTCAAGTAACGAAATTAGATACTATTAAGACAGGCGAAGAGGACGATGAGATTGTATTTAAGCATCGGGCAAAGTTATATCGGTTCGATAAACAATGGAAAGACCGTGGAATAGGTGATATTAAGCTTACTAAGAATGTGAAGACAGGATATTGTCGTGTGATCATGAGGCGTGATATCGTTTATAAGCTTTGTGCAAATCATGCCATCATGCCAAACATGGAACTGAATATGTTAGAATCATCTGACAGATCGTGGATTTGGTTTACCCCATCAGATTATTCAGAAGGACTCCCACCTCAGCCGCAACAGTTTTGCGTTAAATTTAAGAACAAGCAAGTTGCAACGGAATTTAAAACTCGTTTTGAAGAACTTAAATTAGTCATGGATGAGTTACttaaaTCTTTTCTTGCTTTGGAATCGGTAATAGCAGTTACCGATGTTGCTTGGCAAGCGGCAAATCCCGCAGTAACCATTGATTCAAATAGTGAACCTTCAAATCCAATATCATTTAAATTCGGCACAAATCAGACAGGCAAATCTTTACTTGAAACAAACCCACCACAGTCCCCGCCAAGTTCTGGTTTTTCATTTGGAATGCCAAAGACTTCAGAAGCATCAGGTTTTTCATTTGGGCAAAAATCTGATGTTAGTTTATCAGGTTTCTCATTTGGAGTAGCAAAAAATCAAGAGACACCTTCCTTATCAATCGACACTCAGCAAGCCCAGAAAGGTATTTCTTTCGAAGCCAAAGCGGACTTCTTATCgacacaagaaaaaaatgatgatactgAAAATGATCGACCAGATATCGAGAAGAGAGAGCCATGTAACCAACAAAAGTCTACACCGCGATCACTGGATCCAGACCCTAACCCATGGCAGTGCTCTGCTTGCCTATTACAAAACCACAATTCTCGTGAAATATGCCGCAGCTGTTCTTCATCACGTATGCAAACGCCAGTTGTACGGTTAGACCCTAAAAAATCTTCAGACCCCGTTAGTTTAACTTTCAAAAACAGAGACCAAACCCCTATGGTGTACGCGCCGAAAGAAGGACGCTCTAAGTTTAGTGGACCTTTATTTGGAACAGGTTTATCATTGGGAGCAAAAAATACAGCTAAAGATTTTGCACCTAGAGAGTCAAGTTTACCAAAGCCGAACTTAACTGCCGTTTCAGACTGTGAGCTTATGCTTTCCTCGAAAGAGATACCAATAAAGACAAACACAagtctaaaaaataaagaaaaatcttttgaaacaggACCATTATTAGATAATCAAGCAGCACAACTTGCTAGAGATGAAAGGGAAATTTGGCAATGTTCAGTTTGTTTagttaagaatgaaaaaatacGTAACACATGCGTTTCTTGTAATACATCCAAAACTAATCTTTCAACattaagtaaaaataagaatGGAATGAAATTCGGTGCAGACAGTACAGAAAGTAGTTCAACCAAATTTTCTTTTGGATTACCGCAAGCAGTAGGCATTTCATTTGGAACAAGCAATAGAGGCGCGTTTAAGTTTCCCTTGTCAAACGCATTCCAGCCACTGTTTGGAGGAACAAAGGAATTTAATACTCATAACGCACAGAAAAGTTACAATAATAATGAGGATCCAGATATCCACGTTGAGGCCATTGTTCATATATCAAAATTGGATAAAGTAAAAACTGGCGAAAAAGGTGAAGATATATTATTTTGTAATCGTGCCAAGTTGTACACATTTTCTTCTGATTCAAAGACATGGAAAGAACGTGGTATTGGTGAGATCAAACTTACACATAATGAGGAACATGATACCTGCCGAGTTATTATGAATCGAGATCAAGTTCATAAGTTATGTGCCAACCATCCAATTGTGGAGTTTATGGAACTTAAACCTTCAAAGTCTGAGAAATCATGGACATGGTTCACACAAGCTGATATCTCAGATGGAGAAATCAAACCAGAACAATTTTCTGTGCGCTTCAAAACGGTTGAAGTTGCTCAAGAATTCAAATctatctttgaaaaatgtttaagacTTGTGAAGAAGAAGACAGTCGCCAGTGCAGAAACTAATGAGAAACTTAAAGAGTCTTTTCTTGCTTTGGAATCGGTAATAGCAGTTACCGATGTTGCTTGGCAAGCGGCAAATCCCGCAGTAATCATTGATTCAAATAGTGAACCTTCAAATCCAATATCATTTAAATTCGGCACAAATCAGACAGGCaaatctttatttgaaacaaaccCACCACAGTCCCCGCCAAGCTCTGGTATTTCATTTGGAATGTCAAAGACTTCAGAAGCATCAGGTTTTTCATTTGGTCAAAAAGCTGATGTTAGTTTATCAGGTTTCTCATTTGGAGTAGCAAAAAATCAAGAGACACTTTCCTTATTATTCGGCACTCAACAAGCCCAGAAAAGTATTTCTTTCGAAGCCAAAGCGGACTTCTTATCgacacaagaaaaaaatgatgatactgAAAATGATCGACCAGATATCGAGAAGAGAGAGCCATGTAACCAACAAAATTCTACACCGCGATCACTGGATCCAGATCCTAACCCATGGCAAGATGAAAGGGAAATTGCGTCAATCACTGAAGATTTGGCTTTCAAATTCGGTCTCAAAGAACGACAGTGGCAA

Transcript

ENSCIQT00000025575

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48820	E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus OX=9913 GN=RANBP2 PE=2 SV=2
P49792	E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2
H2QII6	E3 SUMO-protein ligase RanBP2 OS=Pan troglodytes OX=9598 GN=RANBP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003339 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00638 all species →	Ran_BP1	RanBP1 domain	Domain	Interproscan
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000156 all species →	Domain	Ran binding domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR045255 all species →	Family	Ran binding protein RanBP1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23138 all species →	RAN BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000021869.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.