Gene detail

Detailed information of ENSCIQP00000022522.1 in Millepora alcicornis

Genomic Location: chr8:176000422...176013602
NR annotation: XP_012555791.2, enhancer of mRNA-decapping protein 4 isoform X1 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSCIQT00000026326

ttcagttttaaaagtaCAAATTCACCATTTTTGATTGCAAGTAGCATTACTGAAAACAACTTAAGAAAAGCTGAAACATGGAATCGCCTGATGCAGTAACGGAAGACCCATGTGATATGTTTCAAGAAATTCAGTGCACTGGAAGTGACAGTAAAAATTCGTTCGGAATTTATGGCAATAATGTGCTTGTGAAAGCGAGCGAACTCGATCAAAGCTGCGATGCTAGTAATAAAATTAAAGTTAGCCAGATCACAAAATTCGAATgggaagaaaaatattatttgggaAACCTAGTTTCCAGCAATGTATCATTTATTGCTTATGTTCTGAGAgtcaaaCCAAATGCAGATGAAACTGTTCGAGTAGTCAATTATCACACATCACATCGTCATTTGCTACGtggattcaaaagaaaagttgaagATATTGCATTTGAATCCTTTAAATCGAATAGACTCGCGTGCATTGACTCGGAAGGGACTGTGTTTGTGTTTAACATTTACGAGAGTGGTGAAGATATTAAATCAAACATCGTCCTTCAAGTAAATCGTGATACTGACTTTGATAAGGTTGGAATGAGTCATCGTATAATTTGGGCGCCATGTTTGTTAGTCCCAGTTGATGACCAGCAGCCTATGTTAGCAATTTCCTTCGGATCGAAGGCTGAAGTATATAATCTTAATAAGATCGTAACCAATCATTCAAGCTTTGTCTTGAGCAAATCCGAACTCACTGATGGCATAATTAATGTTGATAGTGCTCATTCCAAGGATATAACAAGTCTGGCATTGTCACCTGATACAAAAGTCCTTGCTACGTGCAGTCTAGATGGTGAAGTAAAATTTTGGAGTCTAAATTTTGAAGATAGTACTCCACCGAGCTGCCTGCATGAATGGGAACCCCACAATGGAGAGCCAGTCACTTGTCTTTTCTTTTGTGACAATCTGCTTTTGGGAGATGATGAAACTCCATTATGGAGATACCTAATTACAGGCACTGCAAACAACTCTGTGTTAAAGATATGGTGCGCAGTTAAATGGGAGTGTGTGCAGACCATTAGATTCTCAGATTATCAAAATGCAGACCTGAGCAAAGCATTACACCCCTGTATGAAGGCAGCTATTGATTTGTCAGCTAAGTATTTCGTACTTGCTGATGTGTTTAGACAGGTTTTATATATCATGAAACTACATAAAGATgacaacaaagaaaaactttcttttgtttcaatttcgGAATTTATTCTGAAGGAACCATTATTGAGCTTCTCAATAAGTATGGCAAAGGATAAAAGAAATCATATGTCAGACGATTTGGAAGATGTCTTAACTAACGGTATTGATGGTGACGATagtattgatgaaaaagaaggaaaaagtaaTCACCTACCTACTTCCTATTTGAGTCTGTTTGCAATCAATAAAAGagCGCTGCAGAAATATTCCATCAAGTACAAAGCATCTTCATCAGTAGCACCAACACCAGCTTCTGTGTCGACATCTGCATCTTCACAAGAAGATGGCACTTCAATACACGACGCGTTGTCTGATATTACAGACACTTCAGATCTCATTACACCCTCAATAAGTCAGATATCGGCTGTTCAGTCTGAAGATGAAATTTCAAACTCACCACGTGATAATACACTTGAGAACGAAAATGAAAGCAGTCTGACTTCCTTGACGAATATCGACATCACAACGTCAAGGGGATTGTCTCCTAACTTACCGGCAGTAATCACAGAAAATGAAACTCTGATAAACCTCACCGAGACAACCACCAGCGCAACCGAAAGTATAACTACGAGTATAGATTCAAGGGGAAACACCTCTATGGTGTCTGATTCATTTATTAATGTTATCGACAAAATgagttttgataatatatcaacAACTAGTACATCATTTAATCCAGGTTTTCCAAAATTAGTAAATGGGTTCTCATCACTAGATATGATAGAGAACGAAGCAATGAATCCATCTACGAAAAGTTTCAACTTCTCAGTGAATGAGGAAAAACCAGTAGTAGTAGGGTTTGACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LUT1	Enhancer of mRNA-decapping protein 4 OS=Danio rerio OX=7955 GN=edc4 PE=3 SV=1
Q6P2E9	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens OX=9606 GN=EDC4 PE=1 SV=1
Q3UJB9	Enhancer of mRNA-decapping protein 4 OS=Mus musculus OX=10090 GN=Edc4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003906 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16529 all species →	Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR032401 all species →	Domain	Enhancer of mRNA-decapping protein 4, WD40 repeat region	Interproscan
IPR045152 all species →	Family	Enhancer of mRNA-decapping protein 4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15598 all species →	ENHANCER OF MRNA-DECAPPING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0031087 all species →	Biological Process	deadenylation-independent decapping of nuclear-transcribed mRNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000022522.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.